View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_high_5 (Length: 350)
Name: NF3354_high_5
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 51844214 - 51844413
Alignment:
| Q |
12 |
atgaaggtagccggtcaacgaatagaagatgttaaaaatagcnnnnnnntctgaatgaattcaatccaattgtaaatttaactataattagaattaaaat |
111 |
Q |
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| T |
51844214 |
atgaaggtagccggtcaacgaatagaagatgttaaaaatagcaaaaaaatctgaatgaattgaatccaattgtaaatttaactataattagaattaaaat |
51844313 |
T |
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| Q |
112 |
ccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaattccaag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51844314 |
ccaatattggtaattctaaaagttgaagcctccatcaccaatctgttctcacacacgatgacaactttcatgtttccgtttgtggctacccaattccaag |
51844413 |
T |
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