View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3354_high_6 (Length: 343)
Name: NF3354_high_6
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 26731956 - 26731640
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731956 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
26731857 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26731856 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgacaaattatccgctaaagaacctttttccatgtac |
26731757 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26731756 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
26731657 |
T |
|
| Q |
317 |
attcactctctcctttg |
333 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26731656 |
attcactctctcctttg |
26731640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 26690645 - 26690329
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690645 |
caaaatccgctaccttgggttggtaattggagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
26690546 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
26690545 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgacaaattatccgctaaagaacctttttccatgtac |
26690446 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690445 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
26690346 |
T |
|
| Q |
317 |
attcactctctcctttg |
333 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26690345 |
attcactctctcctttg |
26690329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 26694806 - 26694490
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26694806 |
caaaatccgctaccttgggttggtaattggagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
26694707 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| | |||||||||||||||||||||| |
|
|
| T |
26694706 |
ggcaagacactttgcagttccgagagcaattttgtacctcttaccccaattaagcgcatttgatgacaaattatcagttaaagaacctttttccatgtac |
26694607 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26694606 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaagttcagcaagaa |
26694507 |
T |
|
| Q |
317 |
attcactctctcctttg |
333 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
26694506 |
attcactctcttctttg |
26694490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 26750972 - 26751281
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26750972 |
caaaatcagctaccttcggttggtaatcggagtcaacaagtatgttttgcggttttatatcgcaatgcaaaatccactccaaacattcttcgtgtaaata |
26751071 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
||||| | |||||||||||| | |||||| ||||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
26751072 |
cgcaagtccctttgcagttcccatagcaatgttatacctcttaccccaatcaagttcatttgatgagagattatcagctaaagtacccttttccatgtac |
26751171 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
||| |||| |||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
26751172 |
tcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttccaatgatgctaacttcggcaagaa |
26751271 |
T |
|
| Q |
317 |
attcactctc |
326 |
Q |
| |
|
| |||||||| |
|
|
| T |
26751272 |
actcactctc |
26751281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 26744047 - 26744356
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26744047 |
caaaatccgctaccttcggttggtaatcagagtcaacaagtatgttttgcggctttatatcacaatgcaaaatccactccaaacattcttcgtgtaaata |
26744146 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
||||| | |||||||||||| | |||||| |||||||| |||| ||||| |||| ||||||||| | |||||| ||||||| ||| ||||||||| || |
|
|
| T |
26744147 |
agcaaggccctttgcagttcccatagcaatgttataccttttactccaatcaagtttatttgatgaaagattatcggctaaagtaccgttttccatgcac |
26744246 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
|| |||| |||||||| ||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
26744247 |
tcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttcagcaagaa |
26744346 |
T |
|
| Q |
317 |
attcactctc |
326 |
Q |
| |
|
| |||||||| |
|
|
| T |
26744347 |
actcactctc |
26744356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26698648 - 26698962
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26698648 |
caaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaata |
26698747 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
||||||| |||||||||||| | |||||| |||||||| |||||||||| |||| || ||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
26698748 |
agcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattttccatgtac |
26698847 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
||| |||| |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
26698848 |
tcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcagcaagaa |
26698947 |
T |
|
| Q |
317 |
attcactctctcctt |
331 |
Q |
| |
|
| ||| || |||||| |
|
|
| T |
26698948 |
actcattccctcctt |
26698962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26733811 - 26734125
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| |||||||| ||||| ||||| ||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
26733811 |
caaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgtgtaaata |
26733910 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
||||||| |||||||||||| | |||||| |||||||| |||||||||| |||| || ||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
26733911 |
agcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattttccatgtac |
26734010 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
||| |||| |||||||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||||||||||||| |||||||||| |||||| |
|
|
| T |
26734011 |
tcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttcaacaagaa |
26734110 |
T |
|
| Q |
317 |
attcactctctcctt |
331 |
Q |
| |
|
| ||| || |||||| |
|
|
| T |
26734111 |
actcattccctcctt |
26734125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26737036 - 26737350
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| || ||||| ||| | ||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26737036 |
caaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaata |
26737135 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||| ||||| ||||||| |||| |||||||||||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
26737136 |
agcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgatgagagattatcagctaaagtaccattttccatgtac |
26737235 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
||| |||| |||||| | ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
26737236 |
tcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaacttctgcaagaa |
26737335 |
T |
|
| Q |
317 |
attcactctctcctt |
331 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
26737336 |
actcactgtctcctt |
26737350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 17 - 331
Target Start/End: Original strand, 26713800 - 26714114
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| || ||||| ||| | |||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26713800 |
caaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcatgtaaata |
26713899 |
T |
|
| Q |
117 |
tgcaagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtac |
216 |
Q |
| |
|
|||||||| ||||||||||| | |||||| ||| ||||| ||||||| |||| |||||||| ||| |||||| ||||||| ||| |||||||||||| |
|
|
| T |
26713900 |
agcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgataagagattatcagctaaagtaccattttccatgtac |
26713999 |
T |
|
| Q |
217 |
tcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaa |
316 |
Q |
| |
|
||| |||| |||||| | ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
26714000 |
tcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaacttctgcaagaa |
26714099 |
T |
|
| Q |
317 |
attcactctctcctt |
331 |
Q |
| |
|
| ||||| ||||||| |
|
|
| T |
26714100 |
actcactatctcctt |
26714114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 31 - 296
Target Start/End: Original strand, 26675450 - 26675715
Alignment:
| Q |
31 |
ttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagacactttg |
130 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
26675450 |
ttgggtcggtaatcagagtcaataagtatgttttgaggctttatatcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagagcctttg |
26675549 |
T |
|
| Q |
131 |
cagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaa |
230 |
Q |
| |
|
| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| || || ||||||||||| ||||| | | |||| ||||| ||||| |
|
|
| T |
26675550 |
cggttcctagagcaatgttatacctcttaccccaatcaagtgcatttgatgagaggttttcagctaaagaacccttttctacgaactctaaaaccaacaa |
26675649 |
T |
|
| Q |
231 |
tctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaat |
296 |
Q |
| |
|
|||||||||||| || |||||||||| |||| ||||| || ||||| ||||| ||| ||||||| |
|
|
| T |
26675650 |
tctgtgttttccggctaaacaataccccaacatgccaattaagttcatatggttgagcattccaat |
26675715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 47212387 - 47212491
Alignment:
| Q |
193 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
292 |
Q |
| |
|
||||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
47212387 |
gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttc |
47212486 |
T |
|
| Q |
293 |
caatg |
297 |
Q |
| |
|
||||| |
|
|
| T |
47212487 |
caatg |
47212491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 47212252 - 47212304
Alignment:
| Q |
58 |
atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatg |
110 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||| |||||||| |
|
|
| T |
47212252 |
atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg |
47212304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 21108426 - 21108112
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| |||| |||||| ||| | | ||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21108426 |
caaaatcggctaacttgggctggaagttagaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcatgtagata |
21108327 |
T |
|
| Q |
117 |
tgc-aagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgta |
215 |
Q |
| |
|
||| || || | |||| || | | ||||||| ||||| |||| ||||| |||| ||| | || || || || ||||||||||| ||||||||||| |
|
|
| T |
21108326 |
tgctaaaactc-ttgctattgataaaacaattttgtaccttttactccaatcaagtttattagccgataagttttcggctaaagaaccattttccatgta |
21108228 |
T |
|
| Q |
216 |
ctcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaaga |
315 |
Q |
| |
|
||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||||||||| | |||||||| ||| |
|
|
| T |
21108227 |
ctcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctaga |
21108128 |
T |
|
| Q |
316 |
aattcactctctcctt |
331 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
21108127 |
aattcaccttctcctt |
21108112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 55 - 320
Target Start/End: Original strand, 18658599 - 18658870
Alignment:
| Q |
55 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagacacttt-gcagttccgagagcaattttatac |
153 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| ||| || ||| ||||| || ||||| | |||||| | |||| |
|
|
| T |
18658599 |
agtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagctaga-actttagctgttcctaaagcaatatcatac |
18658697 |
T |
|
| Q |
154 |
ctcttaccccaattaagtgcatttg------atgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctg |
247 |
Q |
| |
|
|| |||| ||| | ||||| || | |||| | ||| || |||||||| || ||||||||||||||| | || || | ||| || || || || | |
|
|
| T |
18658698 |
cttttactccagtcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcag |
18658797 |
T |
|
| Q |
248 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattc |
320 |
Q |
| |
|
||||||| ||||||||| ||||||| |||||||||||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
18658798 |
cacaatatccccacatatcaatcaagttcatgtggttaagccgtccaatgatgcttacttcagcaagaaattc |
18658870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 21098807 - 21098502
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
|||||||||||| |||||||| | | | ||| |||| ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||| ||| |
|
|
| T |
21098807 |
caaaatccgctaacttgggttcgaagttagaatcaagaagtatattttgcggctttatatcacaatgtaaaatccattccaaacattcttcatgtagata |
21098708 |
T |
|
| Q |
117 |
tgc-aagacactttgcagttccgagagcaattttatacctcttaccccaattaagtgcatttgatgagaaattatccgctaaagaacctttttccatgta |
215 |
Q |
| |
|
||| || || | || | || | ||||||||| ||||| |||| ||||| |||| ||| | || || || || ||||||||||| ||||||||||| |
|
|
| T |
21098707 |
tgctaaaactc-ttcctattgataaagcaattttgtaccttttactccaatcaagtttattagccgataagttttcggctaaagaaccattttccatgta |
21098609 |
T |
|
| Q |
216 |
ctcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaaga |
315 |
Q |
| |
|
||| |||| || | ||| | ||||||||| || ||||| |||||||| | |||||||||||||| |||||||||||||||| | |||||||| ||| |
|
|
| T |
21098608 |
ctcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatgattcctacttcagctaga |
21098509 |
T |
|
| Q |
316 |
aattcac |
322 |
Q |
| |
|
||||||| |
|
|
| T |
21098508 |
aattcac |
21098502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 317
Target Start/End: Original strand, 21130437 - 21130705
Alignment:
| Q |
55 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgc-aagacactttgcagttccgagagcaattttatac |
153 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||||| || || | | || ||||| | |||||| | |||| |
|
|
| T |
21130437 |
agtatattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagatatgctaaaactc-tagctgttcctaaagcaatatcatac |
21130535 |
T |
|
| Q |
154 |
ctcttaccccaattaagt------gcatttgatgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctg |
247 |
Q |
| |
|
|| ||| ||||| |||| | || ||||| | ||| |||||||||||||| ||||||||||||||| | || || | ||| || || || || |
|
|
| T |
21130536 |
cttttagtccaatcaagtgtgttggttttggatgaaagattttccgctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaa |
21130635 |
T |
|
| Q |
248 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
317 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||| || |||||| ||| |||||||||||||| |
|
|
| T |
21130636 |
cacaatatccccacatttcaatcaaattcatgtggttaagcttttcaatgatgcttacttcagcaagaaa |
21130705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 21123271 - 21123377
Alignment:
| Q |
17 |
caaaatccgctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaata |
116 |
Q |
| |
|
||||||| |||| ||||||||| | | ||| |||| ||||| ||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
21123271 |
caaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggctttatatcacaatgcaaaatccactccatacattcttcatgtagata |
21123370 |
T |
|
| Q |
117 |
tgcaaga |
123 |
Q |
| |
|
|||||| |
|
|
| T |
21123371 |
agcaaga |
21123377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 55 - 320
Target Start/End: Original strand, 21111477 - 21111748
Alignment:
| Q |
55 |
agtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgtaaatatgcaagacacttt-gcagttccgagagcaattttatac |
153 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| ||||| || | |||||||||||||| ||| |||||| ||| | || ||||| | |||||| | |||| |
|
|
| T |
21111477 |
agtatattttgaggctttatatcacaatgcaatatccattcgagacattcttcatgtagataagcaaga-actctagctgttcctaaagcaatatcatac |
21111575 |
T |
|
| Q |
154 |
ctcttaccccaattaagtgcatttg------atgagaaattatccgctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctg |
247 |
Q |
| |
|
|| |||| ||||| ||||| || | |||| | ||| || |||||||| || ||||||||||||||| | || || | ||| || || || || | |
|
|
| T |
21111576 |
cttttactccaatcaagtgtgttagttttagatgaaagattttcagctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcag |
21111675 |
T |
|
| Q |
248 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaattc |
320 |
Q |
| |
|
||||||| |||||||| | ||||| |||||||||||||||| |||||||| || ||||| ||||||||||| |
|
|
| T |
21111676 |
cacaatatccccacatttctatcaagttcatgtggttaagccgtccaatgatacttacttcggcaagaaattc |
21111748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 29213149 - 29213252
Alignment:
| Q |
193 |
gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc |
292 |
Q |
| |
|
||||||||||| || | |||| ||||| | || |||| ||| ||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
29213149 |
gctaaagaaccattatacatgaactcatagacaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttc |
29213248 |
T |
|
| Q |
293 |
caat |
296 |
Q |
| |
|
|||| |
|
|
| T |
29213249 |
caat |
29213252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 109
Target Start/End: Original strand, 29213014 - 29213065
Alignment:
| Q |
58 |
atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcat |
109 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
29213014 |
atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat |
29213065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 112
Target Start/End: Complemental strand, 39132329 - 39132242
Alignment:
| Q |
25 |
gctaccttgggttggtaatcagagtcaattagtatgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatgta |
112 |
Q |
| |
|
|||| ||||||||| || | ||| |||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39132329 |
gctaacttgggttgatagttagaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgta |
39132242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 317
Target Start/End: Complemental strand, 39132100 - 39132031
Alignment:
| Q |
248 |
cacaatacccccacataccaatcaaattcatgtggttaagccttccaatgacgctaacttcagcaagaaa |
317 |
Q |
| |
|
||||||| |||||||| |||| || |||||||| || |||||||| |||| ||| |||||||||||||| |
|
|
| T |
39132100 |
cacaatatccccacatttcaattaagttcatgtgattgagccttccgatgatgcttacttcagcaagaaa |
39132031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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