View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_high_8 (Length: 304)
Name: NF3354_high_8
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 4092363 - 4092643
Alignment:
| Q |
1 |
gaagccaaaggaacatttaagattacactaataaacaacattgttatgttatgttatgtgtgcatatatttcatatagtaagagaatagggaaggttttt |
100 |
Q |
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| T |
4092363 |
gaagccaaaggaacatttaagattacactaataaacaacattgtt-----atgttatgtgtgcatatatttcatatagtaagagaatagggaaggttttt |
4092457 |
T |
|
| Q |
101 |
gttggttgaaatagaagaatgaatgagtggggctatatatattgttccatttcatggattgaagtttatataaaggggattggagggaccatattaatta |
200 |
Q |
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| T |
4092458 |
gttggttgaaatagaagaatgaatgagtggggctatatatattgttccatttcatggattaaagtttatataaaggggattggggggaccatattaatta |
4092557 |
T |
|
| Q |
201 |
taagatcgttaaatcaagagtggagtggagatgg-ttatttgttttgtccgtgtatgaatgatgatatagacgaatttattttaca |
285 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092558 |
taagatcgttaaatcaagagtggagtggagatggtttttttgttttgtccgtgtatgaatgatgatatagacgaatttattttaca |
4092643 |
T |
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