View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_high_9 (Length: 292)
Name: NF3354_high_9
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 44018875 - 44019148
Alignment:
| Q |
1 |
taattttctgggtatgaacaagagaattcaattggaaaagactctcataaggtaacttggaatccaatcgacacttaacaagcggaactgtttcagttgg |
100 |
Q |
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| T |
44018875 |
taattttctgggtatgaacaagagaattcaattggaaaagactctcataaggtaacttggaatccaatcgacacttaacaagcggaactgtttcagttgg |
44018974 |
T |
|
| Q |
101 |
agaacagaatttttctccatcttccagacttagatccttcaaattctctctgtagagcggaaaactacgaaaaacatcagaatcaaatgattcttccaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44018975 |
agaacagaatttttctccatcttccagacttagatccttcaaattctctctgtagagcggaaaactacgaaaaacatcagaatcaaatgattcttccaca |
44019074 |
T |
|
| Q |
201 |
atttcccnnnnnnntgaggtagagtgtccaatggactttaaagttgagaagtcagtggtgcgcacccacataaa |
274 |
Q |
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| T |
44019075 |
atttcccaaaaaaatgaggtagagtgcccaatggactttaaagttgagaagtcagtggtgcgcacccacataaa |
44019148 |
T |
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