View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3354_low_1 (Length: 654)
Name: NF3354_low_1
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Original strand, 4134251 - 4134868
Alignment:
| Q |
20 |
atagttttgtcggcaaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggtggacaatcttggcgttc |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4134251 |
atagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttc |
4134350 |
T |
|
| Q |
120 |
cgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacattaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4134351 |
cgagaaaaacccttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatcc---aatctttcaacactaat |
4134447 |
T |
|
| Q |
220 |
tgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaaca |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4134448 |
tgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatggaaca |
4134547 |
T |
|
| Q |
320 |
gctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
419 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
4134548 |
gctgaatctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaat |
4134647 |
T |
|
| Q |
420 |
ttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttga |
519 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134648 |
ttgttgaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttga |
4134747 |
T |
|
| Q |
520 |
atctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaa |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
4134748 |
atctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgttcgaatttaatgggctgaaa |
4134847 |
T |
|
| Q |
620 |
aatcctagcttgaggtctgtg |
640 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4134848 |
aatcctagcttgaggtctgtg |
4134868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 20 - 640
Target Start/End: Original strand, 4145053 - 4145670
Alignment:
| Q |
20 |
atagttttgtcggcaaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggtggacaatcttggcgttc |
119 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4145053 |
atagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatcttggcgttc |
4145152 |
T |
|
| Q |
120 |
cgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacattaat |
219 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
4145153 |
cgagaaaaactcttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatcc---aatctttcaacactaat |
4145249 |
T |
|
| Q |
220 |
tgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaaca |
319 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4145250 |
tgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatggaaca |
4145349 |
T |
|
| Q |
320 |
gctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
419 |
Q |
| |
|
|||| ||| | |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
4145350 |
gctgaatctgaagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaat |
4145449 |
T |
|
| Q |
420 |
ttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttga |
519 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4145450 |
ttgttgaagatgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttga |
4145549 |
T |
|
| Q |
520 |
atctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaa |
619 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
4145550 |
atctttgagtggttgatctctgtttgcaatccatatgttgttggtctcattgatgtaccaaattcctaagtaacggttgggcgaatttaatgggctgaaa |
4145649 |
T |
|
| Q |
620 |
aatcctagcttgaggtctgtg |
640 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4145650 |
aatcctagcttgaggtctgtg |
4145670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 20 - 632
Target Start/End: Original strand, 4153056 - 4153665
Alignment:
| Q |
20 |
atagttttgtcggcaaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggtggacaatcttggcgttc |
119 |
Q |
| |
|
|||||||| || |||||||| ||||| ||| |||| ||||||||| ||| | | ||||||||||| || ||| ||||| ||| ||| || | || |
|
|
| T |
4153056 |
atagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatc |
4153155 |
T |
|
| Q |
120 |
cgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacattaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||| ||||| |||||||||| | || |
|
|
| T |
4153156 |
cgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatcc---aatctttcaagactagc |
4153252 |
T |
|
| Q |
220 |
tgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaaca |
319 |
Q |
| |
|
|| | |||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| |||| ||||| |||||| |||| | ||||||| |
|
|
| T |
4153253 |
tgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttggaaca |
4153352 |
T |
|
| Q |
320 |
gctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
419 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153353 |
gctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaat |
4153452 |
T |
|
| Q |
420 |
ttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttga |
519 |
Q |
| |
|
||||||||| |||||||||||||||||| || || |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153453 |
ttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttga |
4153552 |
T |
|
| Q |
520 |
atctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggctgaaa |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4153553 |
atctttgagtggttgatctctgtttgcaatccatatattgttggtcttattgatgtaccaaattcctaggtaacggttggttgaatttaatgggctgaaa |
4153652 |
T |
|
| Q |
620 |
aatcctagcttga |
632 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4153653 |
aatcctagcttga |
4153665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 116 - 632
Target Start/End: Original strand, 4123802 - 4124315
Alignment:
| Q |
116 |
gttccgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacat |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| || ||| | ||||||||||||||||||| ||||| |||||||||| | |
|
|
| T |
4123802 |
gttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatcc---aatctttcaagac |
4123898 |
T |
|
| Q |
216 |
taattgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatgg |
315 |
Q |
| |
|
|| || | |||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| |||| ||||| |||||| |||| | ||| |
|
|
| T |
4123899 |
tagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttgg |
4123998 |
T |
|
| Q |
316 |
aacagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgtt |
415 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4123999 |
aacagctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgtt |
4124098 |
T |
|
| Q |
416 |
gaatttgttgaagttgaaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccat |
515 |
Q |
| |
|
||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
4124099 |
gaatttgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccat |
4124198 |
T |
|
| Q |
516 |
ttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatgggct |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4124199 |
ttgaatctttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatgggct |
4124298 |
T |
|
| Q |
616 |
gaaaaatcctagcttga |
632 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4124299 |
gaaaaatcctagcttga |
4124315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 118 - 632
Target Start/End: Original strand, 4163507 - 4164024
Alignment:
| Q |
118 |
tccgagaaaaacccttccattccatggaccagttctccaataaannnnnnnatctttccaaatgaaaacttctggtacatcctccaatctttcaacatta |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| || ||| | |||||| |||||||||||| ||||| |||||||||| | | |
|
|
| T |
4163507 |
tccgagaaaaaccgttccattccatggaccagttctccaatgaattctcttatcataccaaataaaaacttctggtgcatcc---aatctttcaagactt |
4163603 |
T |
|
| Q |
218 |
attgtaaaatgtcctgaagaaggatcattgtcactttttcttgatacaaatgcaatttgcttacctgtaactttgttagatgcaatcttcatcgatggaa |
317 |
Q |
| |
|
| || |||||||||||||||||||||| |||||||||||||||||||| | || | ||| || || |||| ||||||||||| |||||| ||||| |
|
|
| T |
4163604 |
cctatataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaa |
4163703 |
T |
|
| Q |
318 |
cagctgcatccgcagggtgtgtgaaactatcccagattgttgctccagaattgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttga |
417 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| ||||||| || ||||||||| || || | ||||||||||||| |||| ||||||||||||| || |
|
|
| T |
4163704 |
cagcggcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtgga |
4163803 |
T |
|
| Q |
418 |
atttgttgaagttg------aaatgtttgttgaccaaatgatgctgccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaatt |
511 |
Q |
| |
|
|||| ||||| ||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
4163804 |
atttattgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactatt |
4163903 |
T |
|
| Q |
512 |
ccatttgaatctttgagtggttgatctctgtttgcaatccatatgttgttggtttcattgatgtaccaaattcctaagtaacggttggttgaatttaatg |
611 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
4163904 |
ccatttgaatccttgagtggttgatctctgtttgcaatccatatattgttggtctcattgatgtaccaaattcctaggtaacggttggttgaatttaatg |
4164003 |
T |
|
| Q |
612 |
ggctgaaaaatcctagcttga |
632 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4164004 |
ggctgaaaaatcctagcttga |
4164024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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