View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_low_11 (Length: 286)
Name: NF3354_low_11
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 4133981 - 4134234
Alignment:
| Q |
18 |
aacatctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4133981 |
aacatctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaa |
4134080 |
T |
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| Q |
118 |
aacaactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4134081 |
aacaactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatccacctcaagtctaaa |
4134180 |
T |
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| Q |
218 |
aagttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
271 |
Q |
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| T |
4134181 |
atgttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
4134234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 4144788 - 4145036
Alignment:
| Q |
20 |
catctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaa |
119 |
Q |
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|||||||||||||||||||| |||| |||| ||||||||||||||||||||||| | | ||||||| |||||| |||||||||||| |||||| | |||| |
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| T |
4144788 |
catctcacacttcaagttcaatccttctgttctcacacaaccattagtccaatttcctaaactccactccaccgaattctttggctgaaacccatcaaaa |
4144887 |
T |
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| Q |
120 |
caactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
219 |
Q |
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| T |
4144888 |
caactacaaat---tggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
4144984 |
T |
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| Q |
220 |
gttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144985 |
gttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
4145036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 4163141 - 4163392
Alignment:
| Q |
20 |
catctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaa |
119 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4163141 |
catctcacacttcaagttcattccttctttcctcacacaaccattagtccaattccttgaactccactccaccaaattctttggctcaaaccctttaaaa |
4163240 |
T |
|
| Q |
120 |
caactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
219 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| | || |
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| T |
4163241 |
caactacaaatatttggtacactagaaatatcacaatttccaaatggcccacattttccataaaaatcacactcgttttgactaaccgtaagtgatagaa |
4163340 |
T |
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| Q |
220 |
gttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
271 |
Q |
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|||||| |||||| | |||||| |||||||||||| |||| ||||||||| |
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| T |
4163341 |
attccttattattcaaaaactcaaccaacttaagtgttccatttggtgtcaa |
4163392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 4152791 - 4153039
Alignment:
| Q |
20 |
catctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaa |
119 |
Q |
| |
|
|||||||||||| |||||||||||| || ||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||| | |||| |
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| T |
4152791 |
catctcacactttaagttcattccttctttcctcacacaaccattagtccaattgcctaaactccattccacagaattctttggctcaaacccatcaaaa |
4152890 |
T |
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| Q |
120 |
caactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
219 |
Q |
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||||||||||| ||| ||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4152891 |
caactacaaat---tggcacagtagaattatcacagttaccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
4152987 |
T |
|
| Q |
220 |
gttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
271 |
Q |
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|||||||||||||| |||||||||||||||| ||||| ||||| |||||||| |
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| T |
4152988 |
gttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaa |
4153039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 271
Target Start/End: Original strand, 4123441 - 4123689
Alignment:
| Q |
20 |
catctcacacttcaagttcattcctgctgtcctcacacaaccattagtccaattccttgaactccattccaccaaattctttggctcaaaccctttaaaa |
119 |
Q |
| |
|
|||||||||||||||||||| ||| || ||||||||||||||||||||||||| | | ||||||||||||| ||||||||| ||||||||| | |||| |
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| T |
4123441 |
catctcacacttcaagttcaatccctctttcctcacacaaccattagtccaatttcctaaactccattccacagaattctttgcctcaaacccatcaaaa |
4123540 |
T |
|
| Q |
120 |
caactacaaatatttggtacactagaattatcacaatttccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaagtctaaaaa |
219 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
4123541 |
caactacaaat---tggcacaacagaattatcacagttaccaaatggcccacattttccataaaaatcacactcattttgatcaacctcaaatctaagaa |
4123637 |
T |
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| Q |
220 |
gttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaa |
271 |
Q |
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|||||||||||||| ||||||||| |||||||||||| |||||||||||||| |
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| T |
4123638 |
gttcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaa |
4123689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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