View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_low_14 (Length: 250)
Name: NF3354_low_14
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26690274 - 26690032
Alignment:
| Q |
1 |
ctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattttcgaaatcttgctcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690274 |
ctatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattttcgaaatcttgctcctg |
26690175 |
T |
|
| Q |
101 |
caagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaagcc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26690174 |
caagaacgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaagaagcacaaggcctcaattacccctaagcc |
26690075 |
T |
|
| Q |
201 |
agaagtaaaccaaagcatgaacttcattggtccatattcttcg |
243 |
Q |
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| T |
26690074 |
agaagtaaaccaaagcatgaacttcattggtccattttcttcg |
26690032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 2 - 241
Target Start/End: Complemental strand, 26694434 - 26694192
Alignment:
| Q |
2 |
tatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattttcgaaatc---ttgctcc |
98 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||| |
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| T |
26694434 |
tatacacagttcctccagcaccctttccaatctcttgactaaaacattttgttgcttgttttagttccgagtaagtgaatttttgaaatcctgtagctcc |
26694335 |
T |
|
| Q |
99 |
tgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaag |
198 |
Q |
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| T |
26694334 |
tgcaagaacgtagccttgattatctataacaaagtgctcgctattcttaaataagaagaaccatatcataaaaaaacatagcgcctcaattacccctaag |
26694235 |
T |
|
| Q |
199 |
ccagaagtaaaccaaagcatgaacttcattggtccatattctt |
241 |
Q |
| |
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| T |
26694234 |
ccagacgcaaaccaaaggataatcttcactgatccattttctt |
26694192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 26731584 - 26731447
Alignment:
| Q |
2 |
tatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattttcgaaatcttgctcctgc |
101 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26731584 |
tatacacagttcctccagcaccacttccaatctcttgactaaaacattttgttgcaagttttagttccgaataagtgaattttcgaaatcttgctcctgc |
26731485 |
T |
|
| Q |
102 |
aagaatgtagccttgattatctctaacaaagtgcttct |
139 |
Q |
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| T |
26731484 |
aagaacgtagccttgattatctctaagaaagtgcttct |
26731447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 26675808 - 26676026
Alignment:
| Q |
2 |
tatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattttcgaaatc---ttgctcc |
98 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||| | ||| |||||| |||||| ||||||| ||| |
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| T |
26675808 |
tatatacagttcctccagcaccctttccaatctcttgactgaaaccttttgttgcttgtttcaattcagagtaactgaattcccgaaatccaggggctat |
26675907 |
T |
|
| Q |
99 |
tgcaagaatgtagccttgattatctctaacaaagtgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaag |
198 |
Q |
| |
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|||||||||||||||||| |||| | || | |||||||| |||||||||||||||| |||| ||||||||||| || |||||||||| || ||| |
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| T |
26675908 |
tgcaagaatgtagccttgtttatttgtagcggagtgcttcctattcttaaataagaagcaccccgcaataaagaagcacaatacctcaattactcccaag |
26676007 |
T |
|
| Q |
199 |
ccagaagtaaaccaaagca |
217 |
Q |
| |
|
| || | ||||||||||| |
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| T |
26676008 |
caagtcgcaaaccaaagca |
26676026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 26744425 - 26744506
Alignment:
| Q |
2 |
tatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattt |
83 |
Q |
| |
|
||||||||||||| | |||||| ||||||||||||||||| ||| ||||||||| |||||||||| ||||| |||||||| |
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| T |
26744425 |
tatacacagttccacaagcaccctttccaatctcttgactgaaattctttgttgcatgttttagttcagagtaggtgaattt |
26744506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 26751350 - 26751431
Alignment:
| Q |
2 |
tatacacagttcctccagcaccatttccaatctcttgactaaaacattttgttgcaagttttagttccgagtaagtgaattt |
83 |
Q |
| |
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|||||||||||||||||||||| |||| |||||||||||||||| |||||| || |||| | ||| |||||| ||||||| |
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| T |
26751350 |
tatacacagttcctccagcacctcttccgatctcttgactaaaaccttttgtagcttgtttcaattcagagtaactgaattt |
26751431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 26744562 - 26744655
Alignment:
| Q |
133 |
tgcttcttattcttaaataagaaccaccatatcataaagaagcaaaaggcctcaattacccctaagccagaagtaaaccaaagcatgaacttca |
226 |
Q |
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|||||| | ||||| |||||||| ||||||| |||||||||||| ||| ||||||| | || |||||| | |||||||||||||||||||| |
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| T |
26744562 |
tgcttcctgttctttaataagaaacaccataccataaagaagcagaagaactcaattcctcccaagccacttgcaaaccaaagcatgaacttca |
26744655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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