View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3354_low_16 (Length: 239)

Name: NF3354_low_16
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3354_low_16
NF3354_low_16
[»] scaffold0180 (1 HSPs)
scaffold0180 (1-221)||(22633-22853)
[»] chr3 (3 HSPs)
chr3 (1-221)||(46739903-46740122)
chr3 (126-192)||(46721325-46721391)
chr3 (126-221)||(38741508-38741603)
[»] chr6 (3 HSPs)
chr6 (1-91)||(18605307-18605397)
chr6 (131-219)||(931219-931307)
chr6 (131-186)||(10607984-10608039)
[»] chr4 (7 HSPs)
chr4 (42-186)||(11680604-11680752)
chr4 (42-186)||(11688883-11689031)
chr4 (1-91)||(39413274-39413364)
chr4 (131-219)||(25655304-25655392)
chr4 (126-219)||(46764547-46764640)
chr4 (131-219)||(12589868-12589956)
chr4 (126-221)||(52758418-52758513)
[»] chr1 (3 HSPs)
chr1 (1-91)||(32538155-32538245)
chr1 (126-218)||(49611268-49611360)
chr1 (130-187)||(43879062-43879119)
[»] chr7 (3 HSPs)
chr7 (1-91)||(33687434-33687524)
chr7 (130-221)||(29314834-29314925)
chr7 (130-221)||(41224547-41224638)
[»] chr8 (1 HSPs)
chr8 (126-221)||(41092425-41092520)


Alignment Details
Target: scaffold0180 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22633 - 22853
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttattaatttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22633 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttattaatttattt 22732  T
Q  101 atgttaaaaaaggttttgatgctatttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22733 atgttaaaaaaggttttgatgctatttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatat 22832  T
Q  201 gatgcttttgatattgataga 221  Q
    |||||||||||||||||||||    
T  22833 gatgcttttgatattgataga 22853  T

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Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46740122 - 46739903
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttattaatttattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  46740122 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttca-acccgctggtttattaatttattt 46740024  T
Q  101 atgttaaaaaaggttttgatgctatttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46740023 atgttaaaaaaggttttgatgctatttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatat 46739924  T
Q  201 gatgcttttgatattgataga 221  Q
    |||||||||||||||||||||    
T  46739923 gatgcttttgatattgataga 46739903  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 46721391 - 46721325
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaa 192  Q
    ||||||||||||| | | | ||||||||| |||||||||||||||||||||||||||||||||||||    
T  46721391 ttattgatagagagattagaaaaccaaaaggttatggattttgtgagtataaggatgaagaattaaa 46721325  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 38741603 - 38741508
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgataga 221  Q
    ||||||||||||| | | | ||| ||||| |||||| ||||||||||||||| |||||||||||||| |||| |||||  |||| |||||||||||    
T  38741603 ttattgatagagagattagaaaatcaaaaggttatgaattttgtgagtataaagatgaagaattaaataaaagatgattattttaatattgataga 38741508  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18605397 - 18605307
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttatt 91  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||| |||||||||||    
T  18605397 atgatggtgatgaatctggagtgttcataatattccaataatcatgtgttctggattttctgaaattaactgtcacacctgctggtttatt 18605307  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 131 - 219
Target Start/End: Complemental strand, 931307 - 931219
Alignment:
Q  131 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 219  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| | | | |||| ||||| ||||| |||||||||    
T  931307 gatagagaaactaggaaaccaaaaggttatgaattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 931219  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 10607984 - 10608039
Alignment:
Q  131 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaaga 186  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  10607984 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 10608039  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 11680752 - 11680604
Alignment:
Q  42 tcatgtgttctggattttctgcaattaactttcataccagctggtttattaatttatttatgttaaaaaagg----ttttgatgctatttattgatagag 137  Q
    |||| |||||||  |||| || |||||||||||| | | |||||||| || |||| |||||||||||||| |    |||| || ||| ||||||||||||    
T  11680752 tcatatgttctgatttttttggaattaactttcagatctgctggttttttcatttgtttatgttaaaaaaaggtgtttttaatcctagttattgatagag 11680653  T
Q  138 aaacttggaaaccaaaatgttatggattttgtgagtataaggatgaaga 186  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  11680652 aaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 11680604  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 42 - 186
Target Start/End: Complemental strand, 11689031 - 11688883
Alignment:
Q  42 tcatgtgttctggattttctgcaattaactttcataccagctggtttattaatttatttatgttaaaaaagg----ttttgatgctatttattgatagag 137  Q
    |||| |||||||  |||| || |||||||||||| | | |||||||| || |||| |||||||||||||| |    |||| || ||| ||||||||||||    
T  11689031 tcatatgttctgatttttttggaattaactttcagatctgctggttttttcatttgtttatgttaaaaaaaggtgtttttaatcctagttattgatagag 11688932  T
Q  138 aaacttggaaaccaaaatgttatggattttgtgagtataaggatgaaga 186  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  11688931 aaactaggaaaccaaaaggttatggattttgtgagtataaggatgaaga 11688883  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 39413274 - 39413364
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttatt 91  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||| ||| |||||||||||    
T  39413274 atgatggtgatgaatctggagtgttcataatattccaataatcatgtgttctgaattttctgaaattaactgtcacacctgctggtttatt 39413364  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 25655304 - 25655392
Alignment:
Q  131 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 219  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| ||||| ||||| |||||||||    
T  25655304 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagatgattcttttaatattgata 25655392  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 46764640 - 46764547
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 219  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||| |||| || || ||||| |||||||||    
T  46764640 ttatggatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaaaataaaagataattcttttaatattgata 46764547  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 12589868 - 12589956
Alignment:
Q  131 gatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgata 219  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | | | |||| ||||| ||||| |||||||||    
T  12589868 gatagagaaactaggaaaccaaaaggttatggattttgtgagtataaggatgaagactaagataaaagatgattcttttaatattgata 12589956  T

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Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 52758418 - 52758513
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgataga 221  Q
    ||||||||||||| | | | ||||||| |  |||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||||||||    
T  52758418 ttattgatagagagattagaaaaccaatagattatggattttgtgagtataaggatgaagaattaaacaaaagatgattcttttaatattgataga 52758513  T

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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 32538155 - 32538245
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttatt 91  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| ||| ||| ||| |||||||    
T  32538155 atgatggtgatgaatctggagtgttcataatattccaataatcatgtgttctggattttctgaaattaactgtcacacctgctagtttatt 32538245  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 49611268 - 49611360
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgat 218  Q
    ||||||||||||| | | | ||||||||| |||||| |||||||||||||||||||||||||||||| |||| ||||  ||||| ||||||||    
T  49611268 ttattgatagagatattagaaaaccaaaaggttatgaattttgtgagtataaggatgaagaattaaacaaaagatgaatcttttaatattgat 49611360  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 43879119 - 43879062
Alignment:
Q  130 tgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaa 187  Q
    ||||||||||||| ||||||| ||  |||| ||||| |||||||||| ||||||||||    
T  43879119 tgatagagaaactgggaaacctaagggttacggattctgtgagtatacggatgaagaa 43879062  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 33687434 - 33687524
Alignment:
Q  1 atgatggtgatgaatctgaagtgttcatagtattccaataatcatgtgttctggattttctgcaattaactttcataccagctggtttatt 91  Q
    |||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||  ||| |||||||||||    
T  33687434 atgatggtgatgaatctggagtgttcataatatttcaataatcatgtgttctggattttctgaaattaactgtcccacctgctggtttatt 33687524  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 29314925 - 29314834
Alignment:
Q  130 tgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgataga 221  Q
    ||||||| ||||| | ||||||||| || ||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  29314925 tgatagaaaaactagaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgataga 29314834  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 130 - 221
Target Start/End: Original strand, 41224547 - 41224638
Alignment:
Q  130 tgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgataga 221  Q
    ||||||| ||||| | ||||||||| || ||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  41224547 tgatagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgataga 41224638  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 41092520 - 41092425
Alignment:
Q  126 ttattgatagagaaacttggaaaccaaaatgttatggattttgtgagtataaggatgaagaattaaagaaaatatgatgcttttgatattgataga 221  Q
    ||||| ||||| ||||| | ||||||||| || ||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||||    
T  41092520 ttatttatagaaaaactggaaaaccaaaaggtcatggattttgtgagtataaggatgaagaattgaagaaaagattattcttttgatattgataga 41092425  T

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