View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3354_low_3 (Length: 384)
Name: NF3354_low_3
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 26737265 - 26736906
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggt |
109 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26737265 |
tgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggt |
26737166 |
T |
|
| Q |
110 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26737165 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
26737066 |
T |
|
| Q |
210 |
ctgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26737065 |
ctgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
26736966 |
T |
|
| Q |
310 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26736965 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttcaaaagtggatgtttatag |
26736906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 26714029 - 26713670
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggt |
109 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26714029 |
tgagggaaaacataaattgttggtttatgagtacatggaaaatggtactttagctgataatctcttatcaaatgaacttgattggggaaagagatatggt |
26713930 |
T |
|
| Q |
110 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713929 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
26713830 |
T |
|
| Q |
210 |
ctgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26713829 |
atgattatcgacctaaggttgcagattttggtttgtctaagctattgaaaaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
26713730 |
T |
|
| Q |
310 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26713729 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttcaaaagtggatgtttatag |
26713670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 26698876 - 26698518
Alignment:
| Q |
11 |
gagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggta |
110 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| | |
|
|
| T |
26698876 |
gagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaagtgaacttgattggggtaaaaggtataaca |
26698777 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26698776 |
ttgctatgggaactgcaaagggtcttgcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactc |
26698677 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggt |
310 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
26698676 |
ggattatcaacctaaggtagcagattttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggt |
26698577 |
T |
|
| Q |
311 |
tacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
26698576 |
tacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatag |
26698518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 26734039 - 26733681
Alignment:
| Q |
11 |
gagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggta |
110 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || || ||| | |
|
|
| T |
26734039 |
gagggaaaacacagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaagtgaacttgattggggtaaaaggtataaca |
26733940 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
26733939 |
ttgctatgggaactgcaaagggtcttgcttatttacacgaagagtgtttggagtggattttgcattgcgatataaagccacaaaacatacttgttgactc |
26733840 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggt |
310 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
26733839 |
ggattatcaacctaaggtagcagattttggtttgtctaagctattgaataggaatgaccttgataattcaaatttctcgaggattcgagggacaagaggt |
26733740 |
T |
|
| Q |
311 |
tacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
26733739 |
tacatggcacctgaatgggttttcaacatgcaaattacttcaaaagtggatgtttatag |
26733681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 26751201 - 26750842
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
26751201 |
tgagggaaagcatagattgttggtttatgagtacatggaaaagggtactttagctgataatctctcatcaaatgaacttgattggggtaagaggtataac |
26751102 |
T |
|
| Q |
110 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
209 |
Q |
| |
|
|||||||| ||||||||||| | ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26751101 |
attgctatgggaactgcaaagggacttgcgtatttacacgaagaatgtttggagtggattttgcattgcgatataaaaccgcaaaacatacttgttgact |
26751002 |
T |
|
| Q |
210 |
ctgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
309 |
Q |
| |
|
| ||||| | ||| ||||| || ||||||||| |||| ||||||||||| ||| |||| | |||||||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
26751001 |
ccgattaccaaccgaaggtagctgattttggtctgtccaagctattgaatagggatgaccttgataattcaaatttctcgaggattcgagggacaagagg |
26750902 |
T |
|
| Q |
310 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26750901 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggacgtttatag |
26750842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 26744276 - 26743917
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggt |
109 |
Q |
| |
|
||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||| |||||||| ||||||||| ||||||||||| | || || ||| |
|
|
| T |
26744276 |
tgagggaaaacatagattgttggtttacgagtgcatggaaaacggtactttagccgataatctttcatcaaataaacttgattggagtaaaaggtataac |
26744177 |
T |
|
| Q |
110 |
attgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgact |
209 |
Q |
| |
|
|||||||| ||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26744176 |
attgctatgggaactgcaaagggccttgcttatttacacgaagaatgtttggagtggattttgcattgtgatataaagccgcaaaacatacttgttgact |
26744077 |
T |
|
| Q |
210 |
ctgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgagg |
309 |
Q |
| |
|
||||||| | ||| ||||| || |||||||||||||| |||||||| || ||| | || |||| ||||||| ||||| ||||||||||||||| |||| |
|
|
| T |
26744076 |
ctgattaccaaccgaaggtagcggattttggtttgtccaagctattaaatagggacgactttgatcattcaaaattctcgaggattcgagggacaagagg |
26743977 |
T |
|
| Q |
310 |
ttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
26743976 |
ttacatggcacctgagtgggttttcaacatggaaatcacttcaaaagtggatgtttatag |
26743917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 26731728 - 26732086
Alignment:
| Q |
11 |
gagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggta |
110 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||| ||| ||||||| |||||| | |||||||||| |||| ||||||| ||||| ||| | |
|
|
| T |
26731728 |
gagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagcggataatttgtcatcaaatgcacttaattggggtaagaggtataaaa |
26731827 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| | ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
26731828 |
ttgctctcggaactgcaaagtgtcttgcatatttacatgaagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatactaattgactc |
26731927 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggt |
310 |
Q |
| |
|
|||||| | ||| ||||| || |||||||| ||||||||| || | | ||||| | | ||||||||||| ||||||||||| |||| ||| ||||| |
|
|
| T |
26731928 |
tgattaccaacccaaggtagcggattttgggttgtctaagttactacaaaggaacaatcttgataattcaagtttctcaaggatgagaggaacaagaggt |
26732027 |
T |
|
| Q |
311 |
tacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||| || || ||||||||||| |
|
|
| T |
26732028 |
tacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatag |
26732086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 26690417 - 26690775
Alignment:
| Q |
11 |
gagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggta |
110 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||| ||| ||||||| |||||| | |||||||||| |||| ||||||| ||||| ||| | |
|
|
| T |
26690417 |
gagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttagcggataatttgtcatcaaatgcacttaattggggtaagaggtataaaa |
26690516 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| | ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
26690517 |
ttgctctcggaactgcaaagtgtcttgcatatttacatgaagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatactaattgactc |
26690616 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggt |
310 |
Q |
| |
|
|||| | ||| ||||| || |||||||| ||||||||| || | | ||||| | | ||||||||||| ||||||||||| |||| ||| ||||| |
|
|
| T |
26690617 |
caattaccaacccaaggtagcggattttgggttgtctaagttactacaaaggaacaatcttgataattcaagtttctcaaggatgagaggaacaagaggt |
26690716 |
T |
|
| Q |
311 |
tacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| ||||||||| || || ||||||||||| |
|
|
| T |
26690717 |
tacatggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatag |
26690775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 26675661 - 26675305
Alignment:
| Q |
14 |
ggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggtattg |
113 |
Q |
| |
|
||||| || ||||||||||||| |||| | | ||||| ||| |||||||||| || ||||||||||||| |||||||||||| ||||| ||| |||| |
|
|
| T |
26675661 |
ggaaaacacagattgttggttttagagttcgtagaaaagggttctttagctgaaaacctctcatcaaatgcacttgattggggtaagaggtataacattg |
26675562 |
T |
|
| Q |
114 |
ctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctga |
213 |
Q |
| |
|
|| ||||||| ||||| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
26675561 |
ctctaggaaccgcaaaggctcttgcatatttacatgaagaatgtttggagtggattttgcattgtgatataaagcctcaaaacatacttattgactctga |
26675462 |
T |
|
| Q |
214 |
ttatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttac |
313 |
Q |
| |
|
||| ||||| || | | ||||||||| |||||||||||||| | ||||| | | | ||||||||| ||||||||||| |||| ||| |||||||| |
|
|
| T |
26675461 |
ttaccgacccaaaatagtagattttgggttgtctaagctattacataggaacaatcttaataattcaagtttctcaaggatgagaggaacaagaggttac |
26675362 |
T |
|
| Q |
314 |
atggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatagt |
370 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||| || || |||||||||||| |
|
|
| T |
26675361 |
atggcacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatagt |
26675305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 26694578 - 26694936
Alignment:
| Q |
11 |
gagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaatgaacttgattggggaaagagatatggta |
110 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||| ||| ||||| |||||||| | |||||||||| ||| ||||||| ||||| || | |
|
|
| T |
26694578 |
gagggaaaacacagattgttagtttttgagtacatggaaaaaggttctttaactgataatttgtcatcaaatgcgcttaattggggtaagaggtacaaaa |
26694677 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| | ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
|
|
| T |
26694678 |
ttgctctcggaactgcaaagtgtcttgcctatttacatgaagaatgtttggagtggattttgcattgtgacataaagccgcaaaacatactaattgactc |
26694777 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggt |
310 |
Q |
| |
|
|||| | ||| ||||| || |||||||| ||||||||| || | | ||||| | ||||||||||| ||||||||||| |||| ||| ||||| |
|
|
| T |
26694778 |
caattaccaacccaaggtagcggattttgggttgtctaagttagtacaaaggaacaattttgataattcaagtttctcaaggatgagaggaacaagaggt |
26694877 |
T |
|
| Q |
311 |
tacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatag |
369 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| ||||||||| || || ||||||||||| |
|
|
| T |
26694878 |
tacatgggacctgaatggattttcaacttgccaatcacttccaaggtagatgtttatag |
26694936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 47212361 - 47212204
Alignment:
| Q |
89 |
gattggggaaagagatatggtattgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagc |
188 |
Q |
| |
|
||||||||||| |||| || || ||| |||| ||||||||| || | |||||| | |||||||||||||||||||||||||||||||| ||| | |||| |
|
|
| T |
47212361 |
gattggggaaaaagatttgacatagctttaggcactgcaaaaggtttggcttatatccatgaagagtgtttggagtggattttgcattgtgatgtgaagc |
47212262 |
T |
|
| Q |
189 |
cgcaaaacatacttgttgactctgattatcgacctaaggttgcagattttggtttgtc |
246 |
Q |
| |
|
| |||||||| ||| | || ||| |||||| ||| ||| || |||||||||||||||| |
|
|
| T |
47212261 |
cacaaaacattcttttggattctaattatcaaccaaagatttcagattttggtttgtc |
47212204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 332
Target Start/End: Original strand, 47193580 - 47193775
Alignment:
| Q |
137 |
gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagatt |
236 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||| ||||| ||| | || || ||||| || | ||||| | ||| || ||| |||||||| |||| |
|
|
| T |
47193580 |
gcttatttacatgaagagtgtttggaatgggttttacattgtgatgtgaaacctcaaaatattttacttgacacaaattttcaaccaaaggttgctgatt |
47193679 |
T |
|
| Q |
237 |
ttggtttgtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttt |
332 |
Q |
| |
|
||||||| || || |||||||| || |||| | ||||| ||| || ||||| || |||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
47193680 |
ttggtttatcaaaactattgaatagagatgaacgtgatagttctgctttttcaagaataagagggacaagaggttatatggcacctgaatgggttt |
47193775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 21123499 - 21123258
Alignment:
| Q |
17 |
aagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaa---tga---acttgattggggaaagagatatggta |
110 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||| |||||||||| ||||| ||||| || | | |||||||||| | || || |||| || |
|
|
| T |
21123499 |
aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata |
21123400 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| ||||||| || | | |||||||||| |||||||||| ||| ||||||||||||||||||| ||||||||||| ||||| |||||| |||| || |
|
|
| T |
21123399 |
ttgctttaggaacagctagagttcttgcttatctacatgaagaatgtatggagtggattttgcattgtgatataaagcctcaaaatatacttcttgattc |
21123300 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagct |
252 |
Q |
| |
|
| | | || ||| ||| | ||||||||||| ||||||||||| |
|
|
| T |
21123299 |
taactttcaacccaagttagcagattttggattgtctaagct |
21123258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 18658789 - 18658548
Alignment:
| Q |
17 |
aagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaa---tga---acttgattggggaaagagatatggta |
110 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||| |||||||||| ||||| ||||| || | | |||||| ||| | || || |||| || |
|
|
| T |
18658789 |
aagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgactggagtaaaaggtatgata |
18658690 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| ||||||| || ||| ||| |||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||| |||| || |
|
|
| T |
18658689 |
ttgctttaggaacagctaaagttctagcttatctacatgaagaatgtttggaatggattttgcattgtgatataaagcctcaaaacatacttcttgattc |
18658590 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagct |
252 |
Q |
| |
|
| | | || |||||| | ||||||||||| || |||||||| |
|
|
| T |
18658589 |
taactttcaccctaagttagcagattttggattatctaagct |
18658548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 144 - 370
Target Start/End: Original strand, 21108331 - 21108557
Alignment:
| Q |
144 |
tacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagattttggttt |
243 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||| ||| | | | || ||| | || |||||||| || |
|
|
| T |
21108331 |
tacatgaagaatgtttggagtggattttgcattgtgatataaagccacaaaacatacttcttgattctaacttccagcccaagttagccgattttggatt |
21108430 |
T |
|
| Q |
244 |
gtctaagctattgaacaggaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaa |
343 |
Q |
| |
|
||| ||||| |||||||| | | | |||||||| | |||||| |||| |||| ||| |||| || ||||||||||||||| ||||||| ||| | |
|
|
| T |
21108431 |
gtcaaagctgcaaaacaggaacaaccttaataattcatgcatctcaatgattagaggaacaagagggtatatggcacctgaatggattttcaatttgcca |
21108530 |
T |
|
| Q |
344 |
atcacttctaaagtggatgtttatagt |
370 |
Q |
| |
|
|| || ||||| ||||||||||||||| |
|
|
| T |
21108531 |
ataacatctaaggtggatgtttatagt |
21108557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 21111667 - 21111426
Alignment:
| Q |
17 |
aagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatcaaa---tga---acttgattggggaaagagatatggta |
110 |
Q |
| |
|
||||||||| | ||||| |||||||||||||||||||| |||||||||| ||||| ||||| || | | |||||||||| | || || |||| || |
|
|
| T |
21111667 |
aagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata |
21111568 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| ||||||| || | | |||||||||| |||||||||| ||| | || ||||| |||||||| ||||||||||| ||||| |||||| |||| || |
|
|
| T |
21111567 |
ttgctttaggaacagctagagttcttgcttatctacatgaagaatgtctcgaatggatattgcattgtgatataaagcctcaaaatatacttcttgattc |
21111468 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagct |
252 |
Q |
| |
|
| | | || || ||| | ||||||||||| ||||||||||| |
|
|
| T |
21111467 |
taactttcagcccaagttagcagattttggattgtctaagct |
21111426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 21130627 - 21130385
Alignment:
| Q |
17 |
aagcatagattgttggtttatgagtacatggaaaatggtactttagctgataatctctcatc--aaatgaac----ttgattggggaaagagatatggta |
110 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||| ||||||| || ||||| ||||| ||| ||| |||||||| || || |||| || |
|
|
| T |
21130627 |
aagcatagaattttggtatatgagtacatggaaaatggttctttagcggaaaatctttcatccaaaaccaacacacttgattggactaaaaggtatgata |
21130528 |
T |
|
| Q |
111 |
ttgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactc |
210 |
Q |
| |
|
||||| ||||||| || | | | | || ||| |||||||||| |||||||| |||||||||||||| ||||||||||| ||||| |||||| |||| || |
|
|
| T |
21130527 |
ttgctttaggaacagctagagttttagcatatctacatgaagaatgtttggaatggattttgcattgtgatataaagcctcaaaatatacttcttgattc |
21130428 |
T |
|
| Q |
211 |
tgattatcgacctaaggttgcagattttggtttgtctaagcta |
253 |
Q |
| |
|
| | | || || ||| | || |||||||| |||||||||||| |
|
|
| T |
21130427 |
taactttcagcccaagttagccgattttggattgtctaagcta |
21130385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 29213123 - 29212966
Alignment:
| Q |
89 |
gattggggaaagagatatggtattgctataggaactgcaaaatgtcttgcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagc |
188 |
Q |
| |
|
|||||| |||| |||| ||| || ||| |||| ||||||||| || | |||||| | ||||||||||||||||||||||||||||||| ||| | |||| |
|
|
| T |
29213123 |
gattggagaaaaagatttggcatggctttaggtactgcaaaaggtttggcttatatttatgaagagtgtttggagtggattttgcattgtgatgtgaagc |
29213024 |
T |
|
| Q |
189 |
cgcaaaacatacttgttgactctgattatcgacctaaggttgcagattttggtttgtc |
246 |
Q |
| |
|
| |||||||| ||| | || ||| |||||| | | || ||| || ||||||||||||| |
|
|
| T |
29213023 |
cacaaaacattcttttggattctaattatcaatcaaaagtttcaaattttggtttgtc |
29212966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 21098712 - 21098775
Alignment:
| Q |
144 |
tacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttga |
207 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
21098712 |
tacatgaagaatgtttggaatggattttacattgtgatataaagccgcaaaatatacttcttga |
21098775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 21130351 - 21130265
Alignment:
| Q |
284 |
ttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatagt |
370 |
Q |
| |
|
||||||| |||| |||| |||||||| || ||||||||||| ||| ||||||| | | ||| || ||||||||||||||||||||| |
|
|
| T |
21130351 |
ttctcaatgattagaggaacacgaggatatatggcacctgagtggattttcaatttaccaataacatctaaagtggatgtttatagt |
21130265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 367
Target Start/End: Complemental strand, 18658524 - 18658430
Alignment:
| Q |
273 |
ataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttat |
367 |
Q |
| |
|
|||||||| | ||||||| |||| |||| ||| |||| || ||||| ||||| ||| ||||||| ||| ||| || |||||||||||||||||| |
|
|
| T |
18658524 |
ataattcagaattctcaatgattagaggaacaagaggatatatggcccctgagtggattttcaatttgccaataacatctaaagtggatgtttat |
18658430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 21098578 - 21098631
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagc |
63 |
Q |
| |
|
||||||||| ||||| | |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
21098578 |
tgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagc |
21098631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 21108197 - 21108250
Alignment:
| Q |
10 |
tgagggaaagcatagattgttggtttatgagtacatggaaaatggtactttagc |
63 |
Q |
| |
|
||||||||| ||||| | |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
21108197 |
tgagggaaaatatagactattggtttacgagtacatggaaaatggttctttagc |
21108250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 370
Target Start/End: Complemental strand, 21123234 - 21123137
Alignment:
| Q |
273 |
ataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggttttcaacatgcaaatcacttctaaagtggatgtttatagt |
370 |
Q |
| |
|
|||||||| | ||||||| |||| |||| ||| |||| || ||||| ||||||||| ||| ||| | | ||| || ||||||||||||||||||||| |
|
|
| T |
21123234 |
ataattcagaattctcaatgattagaggaacaagaggatatatggcccctgaatggatttccaatttaccaataacatctaaagtggatgtttatagt |
21123137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 370
Target Start/End: Original strand, 39132235 - 39132471
Alignment:
| Q |
137 |
gcttatttacatgaagagtgtttggagtggattttgcattgcgatataaagccgcaaaacatacttgttgactctgattatcgacctaaggttgcagatt |
236 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||| |||| ||| | |||| ||| ||| | ||||| | |
|
|
| T |
39132235 |
gcttatctacatgaagaatgtttggagtggattttacattgtgatataaagcctcaaaatatacttcttgattctaactatcaacccaagttagcagact |
39132334 |
T |
|
| Q |
237 |
ttggtttgtctaagctattgaacag---gaatgagcatgataattcaaacttctcaaggattcgagggacacgaggttacatggcacctgaatgggtttt |
333 |
Q |
| |
|
|||| ||||||||||| || || |||| || ||||||| | ||||||| |||| |||| ||| |||| || ||||| |||||||||||||| |
|
|
| T |
39132335 |
ttggattgtctaagctgagaaatagaaacaatgtcaatagtaattcagaattctcaatgattagaggaacaagaggatatatggctcctgaatgggtttt |
39132434 |
T |
|
| Q |
334 |
caacatgcaaatcacttctaaagtggatgtttatagt |
370 |
Q |
| |
|
||| | | ||| || ||||||||||||||||||||| |
|
|
| T |
39132435 |
caatttaccaataacatctaaagtggatgtttatagt |
39132471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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