View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_low_4 (Length: 375)
Name: NF3354_low_4
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 85 - 368
Target Start/End: Original strand, 48170317 - 48170600
Alignment:
| Q |
85 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
184 |
Q |
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| T |
48170317 |
taatataaactagagagaatgacagtagaatagaaaggcaaggcaactttctgcacgcaaaacagaacaacatctaccaaaaaacgaagatcaagcccat |
48170416 |
T |
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| Q |
185 |
aattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaacgagttaacnnnnnnnnttaactggagctcattgcagaagagtccag |
284 |
Q |
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| T |
48170417 |
aattatatttatgattcgtgaaattagcctcataaatgaagaagaaacagcaatgagttaacaaaaaaaattaactggagctcattgcagaagagtccag |
48170516 |
T |
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| Q |
285 |
atggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctcatgctacttatttcttcatatct |
368 |
Q |
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| T |
48170517 |
atggatattcacatcattaaaattacctccacagtgaaataatccttaagatacacgtctcatgctacttatttcttcatatct |
48170600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 48168772 - 48168849
Alignment:
| Q |
17 |
atagatctctacccatctcctggtacatggata-gcatgttcgtaagaaactcttgtattttcttataataatataaa |
93 |
Q |
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| T |
48168772 |
atagatctctacccatctcctggtacatggatatgcatgttcgtaagaaactcttgtattttcttataataatataaa |
48168849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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