View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3354_low_7 (Length: 313)
Name: NF3354_low_7
Description: NF3354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3354_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 295
Target Start/End: Original strand, 19889975 - 19890250
Alignment:
| Q |
20 |
gggatgacttgtgtccagtttaataaaagatgttataaagatgatccttttgtgttggcctctcaaatccaccaatgcttctacgttcaagatccctaca |
119 |
Q |
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| T |
19889975 |
gggatgacttgtgtccagtttaataaaagatgttataaagttgatccttttgtgttggcctctcaagtccaccaatgcttctacgttcaagatccctaca |
19890074 |
T |
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| Q |
120 |
atgaaaataggaattatgttatgagtactgttcctagagacttctttaatatgaaagaagggtcaaattcaactgcccaagaaccctatcaaagtcaacc |
219 |
Q |
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| T |
19890075 |
atgaaaataggaattatgttatgagtactgttcctagagacttctttaatatgaaagaagggtcaaatttaaatgcccaagaaccctatcaaagtcaacc |
19890174 |
T |
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| Q |
220 |
attagatcatgttataaatttaaccatagctgatgaaagtggtgaagttgaattgtccagagatgatctgccacca |
295 |
Q |
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| T |
19890175 |
attagatcatgttataaatttaaccatagctgatgaaaatggtgaagttgaactgtccagagatgatatgccacca |
19890250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 20 - 283
Target Start/End: Original strand, 24242032 - 24242295
Alignment:
| Q |
20 |
gggatgacttgtgtccagtttaataaaagatgttataaagatgatccttttgtgttggcctctcaaatccaccaatgcttctacgttcaagatccctaca |
119 |
Q |
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| T |
24242032 |
gggacgacttgtgtccaatttaataaaagatgttataaagatgatccttttgtgttggcctctcaagtccaccaatgcttctacgttcaagatccctaca |
24242131 |
T |
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| Q |
120 |
atgaaaataggaattatgttatgagtactgttcctagagacttctttaatatgaaagaagggtcaaattcaactgcccaagaaccctatcaaagtcaacc |
219 |
Q |
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| T |
24242132 |
atgaaaataggaattatgttatgagtattgttcctagagacttctttaatatgaaaaaagggtcaaattcaaatgcccaagaaccttatcaaagtcaacc |
24242231 |
T |
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| Q |
220 |
attagatcatgttataaatttaaccatagctgatgaaagtggtgaagttgaattgtccagagat |
283 |
Q |
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| T |
24242232 |
attagatcatgttataaatttaaccatagctgatgaaaatggtgaagttgaattgtccagagat |
24242295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 168
Target Start/End: Complemental strand, 23492087 - 23491999
Alignment:
| Q |
80 |
tctcaaatccaccaatgcttctacgttcaagatccctacaatgaaaataggaattatgttatgagtactgttcctagagacttctttaa |
168 |
Q |
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| T |
23492087 |
tctcaagtccaccaatgtttttatgtccaagatccctacaatgaaaataaacattatgttatgaagactgtgccgagagatttgtttaa |
23491999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 13253125 - 13253177
Alignment:
| Q |
62 |
gatccttttgtgttggcctctcaaatccaccaatgcttctacgttcaagatcc |
114 |
Q |
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| T |
13253125 |
gatccttttgtatttgcttctcaagtccaccaatgtttctacgttaaagatcc |
13253177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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