View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3355_high_10 (Length: 249)
Name: NF3355_high_10
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 16558712 - 16558952
Alignment:
| Q |
1 |
tgatgacattggtaattatttattaatagtaatttgataatagaataattgaatgtagctacctgtat--tcgtgttgacattcacatgtgtacgacacc |
98 |
Q |
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| T |
16558712 |
tgatgacattggtaattatttattaacagtaatttgagaatagaataattgaatgtggctacatgtatattcgtgttgacattcacatgtgtacgacacc |
16558811 |
T |
|
| Q |
99 |
agacaagcctttgatctagagtgtcag-tgttataactattattattagatgatgaatgtgtattttctcataggtggtcattgattgctggaagaattc |
197 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16558812 |
agacaagcctttgatctagagtgtctgatgttataactattattattagatgatgaatgtgtattttctcataggtggtcattgattgctggaagaattc |
16558911 |
T |
|
| Q |
198 |
ctggaagaacagcagaagaaatagaaaaatattggaattca |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
16558912 |
ctggaagaacagcagaagaaatagaaaaatattggaattca |
16558952 |
T |
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