View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3355_low_10 (Length: 250)
Name: NF3355_low_10
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 32162154 - 32162374
Alignment:
| Q |
19 |
ataaggggtccccttgacgcaacccatgttgcggggaaaatatctggcaaggactaccattaagtagcatagagaaagaaacagatgaaatacaattgaa |
118 |
Q |
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| T |
32162154 |
ataaagggtccccttgacgcaaccaatgttgcggggaaaatgtctggcaaggactaccatttagtagcacggagaaagaaacagatgaaatacaattgaa |
32162253 |
T |
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| Q |
119 |
aactagattttgccatttttgcgaaaatcccatagaatcaagtacaacaattagaaaactccattctatgcgatcatatgctttaccatatccaatttta |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32162254 |
aactagattttgccatttttgcgaaaatcccatagaatcaaatatagcaattagaaaactccattctatgcgatcatatgctttaccatatccaatttta |
32162353 |
T |
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| Q |
219 |
gccccacataacccttcttcc |
239 |
Q |
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||||||||||||||||||||| |
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| T |
32162354 |
gccccacataacccttcttcc |
32162374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 26888769 - 26888939
Alignment:
| Q |
19 |
ataaggggtccccttgacgcaacccatgttgcggggaaaatatctggcaaggactaccattaagtagcatagagaaagaaacagatgaaatacaattgaa |
118 |
Q |
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||||||||||||||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||| || || |
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| T |
26888769 |
ataaggggtccccttgacgtaacccacgttgcagggaaaaagtctggcaaggactaccattaagtagcacggagaaagaaacaaaagaaatacagtttaa |
26888868 |
T |
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| Q |
119 |
aactagattttgccatttttgcgaaaatcccatagaatcaagtacaacaattagaaaactccattctatgc |
189 |
Q |
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| T |
26888869 |
aattagattttaccatttctgcgaaaatcccatagaaccaagtacaacaattagaaaactccactctatgc |
26888939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 237
Target Start/End: Complemental strand, 5142569 - 5142403
Alignment:
| Q |
72 |
ctaccattaagtagcatagagaaagaaacagatgaaatacaattgaaaactagattttgccatttttgcgaaaatcccatagaatcaagtacaacaatta |
171 |
Q |
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|||||||| || |||||||| |||||||| || ||||||||||| ||| ||||||||||||||||| ||||| |||||||| | || | |||||| | |
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| T |
5142569 |
ctaccattgagcagcatagaaaaagaaaccgaagaaatacaattttgaacaagattttgccatttttgagaaaaacccatagattttaggataacaatga |
5142470 |
T |
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| Q |
172 |
gaaaactccattctatgcgatcatatgcttt-accatatccaattttagccccacataacccttctt |
237 |
Q |
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||||| |||||| || |||||||||||||| |||| |||||||| | ||||||||| |||||||| |
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| T |
5142469 |
gaaaatcccattcaattcgatcatatgctttcgccatgtccaatttgatccccacatatcccttctt |
5142403 |
T |
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