View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3355_low_2 (Length: 435)
Name: NF3355_low_2
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 39810112 - 39810529
Alignment:
| Q |
1 |
actattgtgaaagctatgatcatatgtatgtaaatgcaatgtttgatcaatgatcatggccttggcttttatacagtttgcatggattggtacgaggaga |
100 |
Q |
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| T |
39810112 |
actattgtgaaagctatgatcatatgtatgtaaatgcaatgtttgat-------catggccttggcttttatacagtttgcatggattggtacgaggaga |
39810204 |
T |
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| Q |
101 |
aaacatggagcttggtagagattctgatactggtggacaggtacttgatattcatacatatgaacaaattcttttgtccctctcatttagttaataataa |
200 |
Q |
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| T |
39810205 |
aaacatggagcttggtagagattctgatactggtggacaggtacttgatattcatacatatgaacaaattcttttgtccctctcatttagttaataataa |
39810304 |
T |
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| Q |
201 |
tcaatgtattctcacagattaaatatgtggtagaacttgctcgtgcacttgcgaaaacggcaggggtatatagagtagatctcttcacgcgccaaatatc |
300 |
Q |
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| T |
39810305 |
tcaatgtattctcacagattaaatatgtggtagaacttgctcgtgcacttgcgaaaacggcaggggtatatagagtagatctcttcacgcgccaaatatc |
39810404 |
T |
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| Q |
301 |
atctcctgatattgattggagctatggagaacctacagaaatgctatctgcaggtcaagaggataatgacgatgatggtagcactggcgagagcagcggt |
400 |
Q |
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| T |
39810405 |
atctcctgatattgattggagctatggagaacctacagaaatgctatctgcaggtcaagaggataatgacgatgatggtagcactggagagagcagcggt |
39810504 |
T |
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| Q |
401 |
gcatatatcataagaataccctttg |
425 |
Q |
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| T |
39810505 |
gcatatatcataagaataccctttg |
39810529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 345
Target Start/End: Original strand, 15797699 - 15797829
Alignment:
| Q |
215 |
cagattaaatatgtggtagaacttgctcgtgcacttgcgaaaacggcaggggtatatagagtagatctcttcacgcgccaaatatcatctcctgatattg |
314 |
Q |
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||||| |||||||||||||||||||||||||| || ||||||| | | || ||||||||||| ||||| || || |||||||| || || || || ||| |
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| T |
15797699 |
cagatcaaatatgtggtagaacttgctcgtgcgctagcgaaaatgcctggagtatatagagttgatctatttacacgccaaatctcgtcaccagaagttg |
15797798 |
T |
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| Q |
315 |
attggagctatggagaacctacagaaatgct |
345 |
Q |
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| T |
15797799 |
attggagctacggggaacctacagaaatgct |
15797829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 15797561 - 15797636
Alignment:
| Q |
73 |
acagtttgcatggattggtacgaggagaaaacatggagcttggtagagattctgatactggtggacaggtacttga |
148 |
Q |
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| T |
15797561 |
acagtttgcatggattggttaggggagaaaacatggagcttggtcgagattctgacaccggtggacaggtatttga |
15797636 |
T |
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