View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3355_low_3 (Length: 408)

Name: NF3355_low_3
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3355_low_3
NF3355_low_3
[»] chr8 (4 HSPs)
chr8 (43-219)||(25922062-25922238)
chr8 (216-296)||(25922284-25922364)
chr8 (216-280)||(42489119-42489184)
chr8 (366-400)||(25922431-25922465)
[»] chr5 (1 HSPs)
chr5 (216-280)||(41663224-41663289)
[»] chr1 (2 HSPs)
chr1 (216-280)||(40805988-40806053)
chr1 (216-280)||(38617210-38617275)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 25922062 - 25922238
Alignment:
Q  43 aatcaattgaatatagtcacaatggctaatgcaggaggagtctctcagagttgattttgaatgaattgtgttgtcttgactcattcttattaattttctg 142  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25922062 aatcaattgaacataatcacaatggctaatgcaggaggagtctctcagagttgattttgaatgaattgtgttgtcttgagtcattcttattaattttctg 25922161  T
Q  143 atggatgctaaacataggactcaaatgcaaaagcattttctctggctcaaatttatgtttgaaaaccatccagatcc 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25922162 atggatgctaaacataggactcaaatacaaaagcattttctctggctcaaatttatgtttgaaaaccatccagatcc 25922238  T

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Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 25922284 - 25922364
Alignment:
Q  216 atccaactgacacgtgtttaattgaaaatcaatggctcagatctaataataaacttaaattattttcagaacccatatcta 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25922284 atccaactgacacgtgtttaattgaaaatcaatggctcagatctaataataaacttaaattattttcagaacccatatcta 25922364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 42489184 - 42489119
Alignment:
Q  216 atccaactgacacgtg-tttaattgaaaatcaatggctcagatctaataataaacttaaattattt 280  Q
    |||||||||||| ||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||    
T  42489184 atccaactgacatgtggtttaaatgaaaatcaatggctcagatttaataatcaacttaaatcattt 42489119  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 366 - 400
Target Start/End: Original strand, 25922431 - 25922465
Alignment:
Q  366 atgatatcgaccataaaacatagttcctttcttct 400  Q
    |||||||||||||||||||||||||||||||||||    
T  25922431 atgatatcgaccataaaacatagttcctttcttct 25922465  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 41663289 - 41663224
Alignment:
Q  216 atccaactgacacgtg-tttaattgaaaatcaatggctcagatctaataataaacttaaattattt 280  Q
    |||||||||||| ||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||    
T  41663289 atccaactgacatgtggtttaaatgaaaatcaatggctcagatttaataatcaacttaaatcattt 41663224  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 280
Target Start/End: Original strand, 40805988 - 40806053
Alignment:
Q  216 atccaactgacacgtg-tttaattgaaaatcaatggctcagatctaataataaacttaaattattt 280  Q
    |||||||||||| ||| ||||| |||||||||||||||||||| ||||||| ||||||||| ||||    
T  40805988 atccaactgacatgtggtttaaatgaaaatcaatggctcagatttaataatcaacttaaatcattt 40806053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 38617275 - 38617210
Alignment:
Q  216 atccaactgacacgtg-tttaattgaaaatcaatggctcagatctaataataaacttaaattattt 280  Q
    |||||||||||| ||| ||||| ||||||||||||||||| || ||||||| ||||||||| ||||    
T  38617275 atccaactgacatgtggtttaaatgaaaatcaatggctcaaatttaataatcaacttaaatcattt 38617210  T

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