View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3355_low_4 (Length: 402)
Name: NF3355_low_4
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Complemental strand, 11098332 - 11097957
Alignment:
| Q |
17 |
aaatattataactgaaagtttatgttaattatatttatgtttttatgtgaaaacattgtcagaatttgtgttg-tatatataatgatgtttatggtaatt |
115 |
Q |
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| T |
11098332 |
aaatattataactgaaagtttatgttaattatatttatgtttttatgtgaaaacattgtcagaatttgtgttggtatatataatgatgtttatggtaatt |
11098233 |
T |
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| Q |
116 |
tttgggttttaatgatgtttgagatatggatctgttaagatagagatgtaaatttcatgttctgaatattttgacatataaatcttgggactttccaaat |
215 |
Q |
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| T |
11098232 |
tttgggttttaatgatgtttgagatatggatctgttaagatagagatgtaaatttcatgttctgaatattttgacatataaatcttgggactttccaaat |
11098133 |
T |
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| Q |
216 |
ggggtttctgtgatggattttgttcttaaatactagattttctttgatttctttgtcaatcccaaactttcttagattttcattttttgtattgatctta |
315 |
Q |
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| T |
11098132 |
ggggtttctttgatggattttgttcttaaatactagattttctttgatttctttgtcaatcccaaactttcttagattttcattttttgtattgatctta |
11098033 |
T |
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| Q |
316 |
atctcccactttttgggaaaaggggttctggtaatccagagttaggccaagagctaagtaaagtcagactgatgat |
391 |
Q |
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| T |
11098032 |
ttctcccactttttgggaaaaggggttctggtaatccagagttaggccaagaggtaagtaaagtcagactgatgat |
11097957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 376
Target Start/End: Complemental strand, 48190817 - 48190787
Alignment:
| Q |
346 |
gtaatccagagttaggccaagagctaagtaa |
376 |
Q |
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| T |
48190817 |
gtaatccagagttaggccaagagctaagtaa |
48190787 |
T |
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