View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3355_low_5 (Length: 400)
Name: NF3355_low_5
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 25922546 - 25922931
Alignment:
| Q |
1 |
ttcttgatggtgttgtggttgttaatcgcgacggcagaagaacaggttcgtgctaagctactaaagtcatagagaaggattggagctatagatgttgttg |
100 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25922546 |
ttcttgatggtgttgtgattgttaaacgcgacggcagaagaacaggttcgtgctaagctactaaagtcatagagaaggattggagctatagatgttgttg |
25922645 |
T |
|
| Q |
101 |
gagttaccgtaacggtgatggcacccaggtcaatctcaaaacgaagacagaaagcatgtgtggcgacggcggcgatgacgggaggcgccgacaggttgag |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
25922646 |
gagttaccgtaacggtgatggcacccaagtcaatctcaaaacgaagacagaaagcatgtttggcggcggcg------acgggaggcaccgacaggttgag |
25922739 |
T |
|
| Q |
201 |
tggtttaccggattctatattgtgccacatcctttcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25922740 |
tggtttaccggattctatattgtgccacatcctttcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctc |
25922839 |
T |
|
| Q |
301 |
tggaaacatgttcaggtcttcgacttcgacttcgattgtgacggtgtaagtgcagattatgaaaggtttaggtttttcgttaactctctgct |
392 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25922840 |
tggaaacatgctcaggtcttcgacttcgacttcgattgtgacggtgtaagtgcagattatgaaaggtttaggtttttcgttaactctgtgct |
25922931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42488895 - 42488849
Alignment:
| Q |
1 |
ttcttgatggtgttgtggttgttaatcgcgacggcagaagaacaggt |
47 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
42488895 |
ttcttgatggtgtagtgattgttaatcgcgacggcagaagaacaggt |
42488849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 25032359 - 25032291
Alignment:
| Q |
235 |
tcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctctgg |
303 |
Q |
| |
|
||||| |||||||| |||||||| ||||| |||| || ||| |||||||||||||||| ||||||||| |
|
|
| T |
25032359 |
tcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
25032291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 41662993 - 41662947
Alignment:
| Q |
1 |
ttcttgatggtgttgtggttgttaatcgcgacggcagaagaacaggt |
47 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
41662993 |
ttcttgatggtgtagtgattgttaatcgcgacggcagaagaacaggt |
41662947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 38616960 - 38616914
Alignment:
| Q |
1 |
ttcttgatggtgttgtggttgttaatcgcgacggcagaagaacaggt |
47 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
38616960 |
ttcttgatggtgtagtgattgttaatcgcgacggcagaagaacaggt |
38616914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 40806305 - 40806351
Alignment:
| Q |
1 |
ttcttgatggtgttgtggttgttaatcgcgacggcagaagaacaggt |
47 |
Q |
| |
|
||||| ||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
40806305 |
ttctttatggtgtagtgattgttaatcgcgacggcagaagaacaggt |
40806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 325
Target Start/End: Original strand, 45339362 - 45339452
Alignment:
| Q |
235 |
tcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctctggaaacatgttcaggtcttcgact |
325 |
Q |
| |
|
||||||||||||| | |||||| |||||| | |||| ||||||||| | |||||| ||||||| ||||| ||| ||||||||||||||| |
|
|
| T |
45339362 |
tcatttctcccaatgtgaacctatgtggcaatgatgagtcttgtctcccataggtggtgcaatctttggaatcatcttcaggtcttcgact |
45339452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University