View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3355_low_6 (Length: 299)
Name: NF3355_low_6
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 56376950 - 56376675
Alignment:
| Q |
9 |
agcagagaaaaactgcgcacaaggccagtcaccgctatcatctttatccaaaaaagtagtaatatatcacataaatttgttaatcgttactatgatttag |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
56376950 |
agcaaagaaaaactgcgcacaaggccagtcaccgctatcatctttatccaaaaaagtagtaatatgtcacataaatttgttaatcgttactatgatttag |
56376851 |
T |
|
| Q |
109 |
tagaatgattatgttgtatcgtgcttaattgtaacattgaaactgagatgaaaacatccttgtctctatctgtctatttctctgtcacacgtgatgaatc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
56376850 |
tagaatgattatgttgtatcgtgcttaattgtaacattgaaactgagatgaaaacatccttgtctctatctgtctatttctctgtcacatgtgatgaatc |
56376751 |
T |
|
| Q |
209 |
tgaatgcaattgaattgctgtttgtattccaaatgaacatcattggcatgttgagggaactgtttcttgacataac |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56376750 |
tgaatgcaattgaattgctgtttgtattccaaatgaacatcattggcatgttgagggaactgtttcttgacataac |
56376675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University