View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3355_low_7 (Length: 289)
Name: NF3355_low_7
Description: NF3355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3355_low_7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 17309206 - 17308927
Alignment:
| Q |
12 |
atcatcatgtcaagtgctcaacaaagcttgaaccaagcccaatcccacggccagactcaggtgaaagcacaaaattgttaaattatattttaattttgtg |
111 |
Q |
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| T |
17309206 |
atcatcatgtcaagtgctcaacaaaacttcaaccaagcccaatcccacggccagactcaggtgaaagcacaaaattgttaaattatattttaattttgtg |
17309107 |
T |
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| Q |
112 |
aatttttactacacatatatatcatgttaacttgtaaca--nnnnnnnnnattatggctagcctaaggctgacgaatggattcaatccacaaaggattca |
209 |
Q |
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| T |
17309106 |
aatttttactacacatatatatcatgttaacttgtaacatttttttttttattatggctagcctaaggctgatgaatggattcaatccacaaaggattca |
17309007 |
T |
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| Q |
210 |
gccattgcagctgtagagagggctcatgcagcttctactgacagggctcatgaagctgctgacgcaacagggcagaatgc |
289 |
Q |
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| T |
17309006 |
gccattgcagctgtagagagggctcatgcagcttctactgacagggctcatgaagcttctgacgcaacagggcagaatgc |
17308927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 17320605 - 17320413
Alignment:
| Q |
15 |
atcatgtcaagtgctcaacaaagcttgaaccaagcccaatcccacggccagactcaggtgaaagcacaaaattgttaaattatattttaattttgtgaat |
114 |
Q |
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| T |
17320605 |
atcatgttaagtgcttagcaaaacttcaaccaaggccaatcccacggccagactcaggtaaaagcacaaaattgttca---------catttctgtgaat |
17320515 |
T |
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| Q |
115 |
ttttactacacatatatatcatgttaacttgtaaca----nnnnnnnnnattatggctagcctaaggctgacgaatggattcaatccacaaaggattcag |
210 |
Q |
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| T |
17320514 |
ttatactacacatttatatcatgttaatttgtaatatatttttttttttattatggctaggctaaggctgaggaatggattcaatccacaaaggattcag |
17320415 |
T |
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