View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_high_11 (Length: 396)

Name: NF3356_high_11
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_high_11
NF3356_high_11
[»] chr3 (4 HSPs)
chr3 (144-380)||(1323257-1323493)
chr3 (206-377)||(1337367-1337538)
chr3 (201-377)||(1263162-1263338)
chr3 (105-143)||(1323510-1323548)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 1323493 - 1323257
Alignment:
Q  144 aaaaatcacggaaatgaccgttggtaatcaaattcattttataaatgtatatatatttttgtagagatttgtgccatcagattttggtgtagaagaagac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1323493 aaaaatcacggaaatgaccgttggtaatcaaattcattttataaatgtatatatatttttgtagagatttgtgccatcagattttggtgtagaagaagac 1323394  T
Q  244 cgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagagaaatcgaagcagctggaattccttatacttatgtctctg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1323393 cgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagagaaatcgaagcagctggaatcccttatacttatgtctctg 1323294  T
Q  344 caaattgttttggtgcatactttgtcaatatcttact 380  Q
    |||||||||||||||||||||||||||||||||||||    
T  1323293 caaattgttttggtgcatactttgtcaatatcttact 1323257  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 206 - 377
Target Start/End: Complemental strand, 1337538 - 1337367
Alignment:
Q  206 agagatttgtgccatcagattttggtgtagaagaagaccgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagaga 305  Q
    |||||||| | |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1337538 agagatttcttccatcagactttggtgtagaagaagacagagtacaccctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagaga 1337439  T
Q  306 aatcgaagcagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatctt 377  Q
    ||| |||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| ||||    
T  1337438 aattgaagcagcaggaatcccttatacttttgtctcagcaaattgttttggtgcatactttgtgaatttctt 1337367  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 1263162 - 1263338
Alignment:
Q  201 tttgtagagatttgtgccatcagattttggtgtagaagaagaccgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattaga 300  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||  ||||  | |||||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1263162 tttgtagagatttcttccatcggattttggtgtggaagaagatagagtaaaacctcttcctccattccaaggtttccttgataagaaaagaaaaattaga 1263261  T
Q  301 agagaaatcgaagcagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatctt 377  Q
    || ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| ||||    
T  1263262 agggaaattgaagcatctgggattccttatacttttgtctctgcaaattgttttggggcatattttgtgaatttctt 1263338  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 1323548 - 1323510
Alignment:
Q  105 aaaatagtacaagtagtatctgatatcattttttctccg 143  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  1323548 aaaatagtactagtagtatctgataccattttttctccg 1323510  T

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