View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_13 (Length: 380)
Name: NF3356_high_13
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 177 - 363
Target Start/End: Original strand, 51340480 - 51340665
Alignment:
| Q |
177 |
tcatagctaaaaattttggcaataaaaagtgatcatagtt-gctttccgaatatttttattctgaaatttcttattgtttgagtaataatagctcttcac |
275 |
Q |
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| T |
51340480 |
tcatagctaaaaaatttggcaataaaaagtga--atagtttgctttccgaatatttttactctgaaatttcttattgtttgagtataaatagctcttcac |
51340577 |
T |
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| Q |
276 |
tcaatgcagaaatagcttgataactttaacacatgttattttcccgtctattcaggtgtttgttaaggcttttttagttcccactaaa |
363 |
Q |
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| T |
51340578 |
tcaatgcagaaatagcttgataactttagcacatgttattttctcgtctattcaggtgtttgttaaggcttttttagttcccactaaa |
51340665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 51340351 - 51340472
Alignment:
| Q |
16 |
ataggtcttgtatgtacacaacattcagtattcgattaacgtctatcaaatacatcctttcgtcaaatccaaatattaaatatgatggtcgatggcatgc |
115 |
Q |
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|||||| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51340351 |
ataggttttgtatgtacgcaacattcaatattcgattaacgtctatcaaatgcatcctttcgtcaaatccaaatattaaatataatggtcgatggcatgc |
51340450 |
T |
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| Q |
116 |
aatcttaaatgatgatgtggta |
137 |
Q |
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| T |
51340451 |
aatcttaaatgatgatgtggta |
51340472 |
T |
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