View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_19 (Length: 321)
Name: NF3356_high_19
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 34 - 309
Target Start/End: Complemental strand, 21360614 - 21360344
Alignment:
| Q |
34 |
taaaacactcttaaacaagtgcatcaattatgagtctttcaaaaaggtttttgtctttgttaagctgaaattaatctatatatacttgacaatttactat |
133 |
Q |
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| T |
21360614 |
taaaacactcttaaacaagtgcatgaattatgagtatttcaaaaaggtttttgtctttgttaaactgaaattaatctatata--cttgacaatttactat |
21360517 |
T |
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| Q |
134 |
caattaaatccttatgttttagcaacttatatcaatttagtcgataaatttacctatttactatcaatttagtccctattatactctcaaagtaataata |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
21360516 |
caattaaatccttatgttttagcaacttatatcaatttagtcgataaatttacctatttattatcaatttagtccctattatactctgaaagtaataata |
21360417 |
T |
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| Q |
234 |
tgagtaaaattttatagagtcaaaaatacttttaaaatattcataaagtcaataatctacttgagagcatcctata |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21360416 |
tgagtaaaattt--tagagtcaaaaatacttttaaaatattca-aaagtcaataatctacttgagagcatcctata |
21360344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 21360659 - 21360621
Alignment:
| Q |
18 |
ctatcgagtaaaccggtaaaacactcttaaacaagtgca |
56 |
Q |
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| T |
21360659 |
ctatcgagtaaaccactaaaacactcttaaacaagtgca |
21360621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Complemental strand, 41423124 - 41423074
Alignment:
| Q |
229 |
taatatgagtaaaattttatagagtcaaaaatacttttaaaatattcataa |
279 |
Q |
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| T |
41423124 |
taatataagtaagatttgataaagtcaaaaatatttttaaaatattcataa |
41423074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 28596683 - 28596594
Alignment:
| Q |
163 |
tatcaatttagtcgataaatttacctatttactatcaatttagtccctattatactctca-aagtaataatatgagtaaaattttataga |
251 |
Q |
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||||||||||||| || ||||| | | ||||||||||||||||| ||| ||||||| | ||| | ||||||||||||||||| ||||| |
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| T |
28596683 |
tatcaatttagtccctatatttaaccaattactatcaatttagtctctaacatactctaagaaggactaatatgagtaaaatttgataga |
28596594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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