View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_22 (Length: 289)
Name: NF3356_high_22
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 268
Target Start/End: Complemental strand, 26203867 - 26203611
Alignment:
| Q |
12 |
atgaagtgaagaggttgggtgcgtgtgggtcccacttaatctctttcttaaccccc-actttccattttatagactcaccacatcaccgacgcataccaa |
110 |
Q |
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| T |
26203867 |
atgaagtgaagaggttgggtgcgtgtgggtcccacttaatctctttcttaaccccccactttccattttatacactcaccacatcaccgacgcataccaa |
26203768 |
T |
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| Q |
111 |
acactcaaatnnnnnnntcaattcaactccaactaactccaccagccaccaccatgacgacggcgatctcggtggcggaacccgaactgaaaacatactg |
210 |
Q |
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| T |
26203767 |
gcactcaaataaaaaaatcaattcaactc-aactaactccaccagccaccaccatgacgacggcgatctcggtggcggaacccgaactgaaaacatactg |
26203669 |
T |
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| Q |
211 |
gtgccacgaatgtgacatgagcgtttctttaactacttctcacaccccctctcctcta |
268 |
Q |
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||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
26203668 |
gtgccacgaatgtgacatgagtgtttctttaactacttctctcaccccctctcctcta |
26203611 |
T |
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