View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_27 (Length: 256)
Name: NF3356_high_27
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_27 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 59 - 241
Target Start/End: Complemental strand, 21093100 - 21092918
Alignment:
| Q |
59 |
ggcggagaattgaggaggaatggagatgttatcagaaaaggacttgatctgatcggcttgacggagagcggcggatttgatctcatctgctttcttggaa |
158 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21093100 |
ggcggagaattgaggaggaatggagatgttatcggaaaaggacttgatctgatcggcttgacggagagcggcggatttgatctcatctgctttcttggaa |
21093001 |
T |
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| Q |
159 |
gcttcggcggcgagttctttggatttcttggcggtttcggagacgagatcggcgattcgagaagtggcggaggaggttgttag |
241 |
Q |
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| T |
21093000 |
gcttcggcggcgagttctttggatttcttggcggtttcggagacgagatcggcgattcgagaagtggcggaggaggtggttag |
21092918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 59 - 241
Target Start/End: Complemental strand, 21091039 - 21090865
Alignment:
| Q |
59 |
ggcggagaattgaggaggaatggagatgttatcagaaaaggacttgatctgatcggcttgacggagagcggcggatttgatctcatctgctttcttggaa |
158 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21091039 |
ggcggagaattgaggaggaatggagatgttatcggaaaaggacttgatctgatcggcttgacggagagcggcggatttgatctcatttgcttt------- |
21090947 |
T |
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| Q |
159 |
gcttcggcggcgagttctttggatttcttggcggtttcggagacgagatcggcgattcgagaagtggcggaggaggttgttag |
241 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21090946 |
-cttcagcggcgagttctttggatttcttggcggtttcggagacgagatcggcgattcgagaagtggcgaaggaggttgttag |
21090865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21095930 - 21095990
Alignment:
| Q |
1 |
caaagaagagtgaagacgctaaggtagagcaatctgatgttagtggaggaagtggaaaggc |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21095930 |
caaagaagagtgaagacgctaaggtagagcaatctgatgttagtggaggaagtggaaaggc |
21095990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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