View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_high_29 (Length: 253)

Name: NF3356_high_29
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_high_29
NF3356_high_29
[»] chr3 (12 HSPs)
chr3 (1-235)||(38866877-38867113)
chr3 (38-229)||(30859041-30859232)
chr3 (28-231)||(39193508-39193711)
chr3 (32-220)||(530137-530334)
chr3 (32-152)||(563280-563400)
chr3 (32-220)||(553100-553297)
chr3 (39-152)||(486158-486271)
chr3 (32-220)||(572932-573129)
chr3 (161-220)||(540904-540963)
chr3 (35-152)||(14963826-14963937)
chr3 (67-152)||(540981-541066)
chr3 (159-220)||(14963953-14964014)
[»] chr6 (5 HSPs)
chr6 (42-231)||(34729092-34729281)
chr6 (42-227)||(3047836-3048021)
chr6 (42-232)||(34605442-34605632)
chr6 (42-232)||(34726719-34726909)
chr6 (42-232)||(33466127-33466317)
[»] chr5 (1 HSPs)
chr5 (39-226)||(1204735-1204920)
[»] chr4 (2 HSPs)
chr4 (42-231)||(55773499-55773697)
chr4 (42-231)||(55837710-55837908)
[»] chr1 (9 HSPs)
chr1 (32-216)||(40026723-40026916)
chr1 (33-148)||(2418256-2418371)
chr1 (32-232)||(49440744-49440953)
chr1 (33-229)||(40140475-40140680)
chr1 (105-152)||(49287012-49287059)
chr1 (104-220)||(48178947-48179072)
chr1 (161-220)||(47873545-47873604)
chr1 (104-152)||(41185592-41185640)
chr1 (104-148)||(49540963-49541007)
[»] chr7 (1 HSPs)
chr7 (104-148)||(32347905-32347949)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38867113 - 38866877
Alignment:
Q  1 tctttaaagtcaattactcatgtggttcttgccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaa 100  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38867113 tctttaaagtcgattactcctgtggttcttgccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaa 38867014  T
Q  101 caat--ttgcatgtctatcaatctcgaaatcttggttgggttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatg 198  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38867013 caatatttgcatgtctatcaatctcgaaatcttggttgggttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatg 38866914  T
Q  199 ttatcactgacaaggccaacattgggatactcagttt 235  Q
    |||||||||||||||||||||||||||||||||||||    
T  38866913 ttatcactgacaaggccaacattgggatactcagttt 38866877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 30859232 - 30859041
Alignment:
Q  38 cttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgg 137  Q
    |||||||||||||| |||| ||||| |||||||| || | |||||||||||| |   |||| | |||||  |||||||||||||||||||||||||||||    
T  30859232 cttacttgctttttccagatgctcaaaggaatttttcctagtggttttatgtcgtgattctgataatttatatgtctatcaatctcgaaatcttggttgg 30859133  T
Q  138 gttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatact 229  Q
    ||||||||||| |||||| | | |||| |||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||    
T  30859132 gttacttattcgacaccagagaaggttattgactttgttgttttgcacaataccatatatgttgtcactgacaaggctaacatagggatact 30859041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 28 - 231
Target Start/End: Complemental strand, 39193711 - 39193508
Alignment:
Q  28 cttgccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaa 127  Q
    ||||||| | ||| |||| |||||  |||||||||   ||||||| |||||||||||| | || || || | ||||||||||||||||||||||||||||    
T  39193711 cttgccaagtcttgcttgttttttctagaggctcaactgaatttgacttggtggttttgtttaaaatttatcacaatttgcatgtctatcaatctcgaaa 39193612  T
Q  128 tcttggttgggttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggata 227  Q
    ||||| ||||||||||||||  ||| |||||| ||||||||| |||||||||||||||||||||||||| ||| ||||| |||| |||||||| ||||||    
T  39193611 tcttgattgggttacttatttgacatcacataaggttgttgactttgttgttttgcacaataccatatacgttgtcactaacaaagccaacatagggata 39193512  T
Q  228 ctca 231  Q
    ||||    
T  39193511 ctca 39193508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 530334 - 530137
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||| |||||||||||||  || ||||  |||||| ||| |||| |||| |||||||| |||||||  || |||||||||||| |||||||||||| ||    
T  530334 ccatgtcttacttgcttttggcaaaggcatagaggagtttatcttagtggctttatgtaaaagttctggcagtttgcatgtctaccaatctcgaaatttt 530235  T
Q  132 ggttgggttacttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||| ||| |||||||||         |||   | ||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  530234 ggttgggctacctattcaacaaagggaaatccattgaaggttgttgactttgttgttttgcagaatactatatatgttgtcactgacaaggccaacat 530137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 152
Target Start/End: Complemental strand, 563400 - 563280
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||| |||||||||||||  || |||||||||||| ||| |||| |||| |||||||| |||||||  | |||||||||||||||||||||||||| ||    
T  563400 ccatgtcttacttgcttttggcaaaggctcagaggagtttatcttagtggctttatgtaaaagttctggccatttgcatgtctatcaatctcgaaatttt 563301  T
Q  132 ggttgggttacttattcaaca 152  Q
    ||||||| ||| |||||||||    
T  563300 ggttgggctacctattcaaca 563280  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 553297 - 553100
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||| |||||||||||||  || |||||| |||||||||||||| || | || ||||| ||| |||  || |||| |||||||||| ||||||||| |     
T  553297 ccatgtcttacttgcttttggcaaaggctcggaggaatttgtcttagtcgcttcatgtaaaagatctggcagtttgtatgtctatcagtctcgaaatttg 553198  T
Q  132 ggttgggttacttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||||||| |||||||||         |||   | ||||||||| ||||||||||||||  |||| ||||| ||| |||||||||||||||||||    
T  553197 ggttgggttacatattcaacaatggaaagtccatggaaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacat 553100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 486271 - 486158
Alignment:
Q  39 ttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttggg 138  Q
    ||||||||||||  || |||||| |||||||||||||| || | || ||||| |||||||| || |||| |||||||||| ||||||||| | |||||||    
T  486271 ttacttgcttttggcaaaggctcggaggaatttgtcttagttgcttcatgtaaaagttctagcagtttgtatgtctatcagtctcgaaatttgggttggg 486172  T
Q  139 ttacttattcaaca 152  Q
    |||| |||| ||||    
T  486171 ttacatatttaaca 486158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 573129 - 572932
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||| ||||||||||||   || |||||| ||||||||||| || || | || ||||| |||||||  || |||| |||||||||| ||||||||| |     
T  573129 ccatgtcttacttgctttcggcaaaggctcggaggaatttgtgttcgtcgcttcatgtaaaagttctggcagtttgtatgtctatcagtctcgaaatttg 573030  T
Q  132 ggttgggttacttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||||||| |||||||||         |||   | ||||||||| ||||||||||||||  |||| ||||| ||| |||||||||||||||||||    
T  573029 ggttgggttacatattcaacaatggaaagtccatcgaaggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacat 572932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 540963 - 540904
Alignment:
Q  161 ggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||||| ||||||||||||||  |||| ||||| ||| |||||||||||||||||||    
T  540963 ggttgttgactttgttgttttgcatcatactatatacgttgtcactgacaaggccaacat 540904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 14963826 - 14963937
Alignment:
Q  35 tgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggt 134  Q
    ||||||||||||||||  || | |||| ||||||||||||||||| |||||||| | | ||  |      ||||||||||||||||||| ||||  || |    
T  14963826 tgccttacttgcttttggcaaatgctctgaggaatttgtcttggttgttttatgcaaacgtcgt------ttgcatgtctatcaatctcaaaattgtgat 14963919  T
Q  135 tgggttacttattcaaca 152  Q
    ||||||||||||||||||    
T  14963920 tgggttacttattcaaca 14963937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 152
Target Start/End: Complemental strand, 541066 - 540981
Alignment:
Q  67 aatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggttacttattcaaca 152  Q
    |||||||||| || | || ||||| ||| |||  || |||| |||||||||| ||||||||| | ||||||||||| |||||||||    
T  541066 aatttgtcttagtcgcttcatgtaaaagatctggcagtttgtatgtctatcagtctcgaaatttgggttgggttacatattcaaca 540981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 14963953 - 14964014
Alignment:
Q  159 agggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||||||| ||||| |||||||| ||||  ||||||||||||||| ||| |||| ||||    
T  14963953 agggttgttgactttgtggttttgcataatataatatatgttatcactaacatggcctacat 14964014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 34729092 - 34729281
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    |||||||||| || |||||| |||||||||| ||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |||||  |     
T  34729092 cttgctttttccaaaggctcggaggaatttgccttggtggtttcatgtagaaattctgataatttgcatgtctatcaatctcgaaatctttgttggactg 34729191  T
Q  142 cttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactca 231  Q
    ||||||| |||||||||| ||||||||| |||| ||||||  |  ||| |||||||||| |||||||||||||||||||  |||||||||    
T  34729192 cttattcgacaccacataaggttgttgactttgatgttttaaattatatcatatatgttgtcactgacaaggccaacataaggatactca 34729281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 3047836 - 3048021
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    |||||||||| |||||| |||||||||||||||||| ||||||||||||||  ||||||  |||||||||||||||||||||||| | || |||||||||    
T  3047836 cttgctttttgcagaggttcagaggaatttgtcttgctggttttatgtagagattctaatgatttgcatgtctatcaatctcgaagttttagttgggtta 3047935  T
Q  142 cttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggata 227  Q
    ||||||  ||||| || | ||||||||| |||||||| ||||| | ||||||||||||| ||||  |||| |||||||| ||||||    
T  3047936 cttatttgacaccgcaaaaggttgttgactttgttgtattgcagagtaccatatatgttgtcaccaacaaagccaacatagggata 3048021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 34605442 - 34605632
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    |||||||||| || ||||||| ||||||||||||||||||||| ||||| || |||| | |||||||||||||||||||||||||||||| |||||  |     
T  34605442 cttgctttttccaaaggctcaaaggaatttgtcttggtggtttcatgtaaaaattctgataatttgcatgtctatcaatctcgaaatctttgttggactg 34605541  T
Q  142 cttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactcag 232  Q
    ||||||| |||||||| | ||||||||| |||| ||||||  |   || |||||||||| ||||||||||||||| ||| |||||||||||    
T  34605542 cttattcgacaccacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcag 34605632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 42 - 232
Target Start/End: Original strand, 34726719 - 34726909
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    |||||||||| || ||||||| ||||||||||||||||||||| ||||| || |||| | |||||||||||||||||||||||||||||| |||||  |     
T  34726719 cttgctttttccaaaggctcaaaggaatttgtcttggtggtttcatgtaaaaattctgataatttgcatgtctatcaatctcgaaatctttgttggactg 34726818  T
Q  142 cttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactcag 232  Q
    ||||||| |||||||| | ||||||||| |||| ||||||  |   || |||||||||| ||||||||||||||| ||| |||||||||||    
T  34726819 cttattcgacaccacagaaggttgttgactttgctgttttaaattctatcatatatgttgtcactgacaaggccagcatagggatactcag 34726909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 232
Target Start/End: Complemental strand, 33466317 - 33466127
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    ||||||||||  | |||||| |||||||||||||||||||||||| ||| || || | | |||||||||||||||| ||||| || |||| |||||  |     
T  33466317 cttgctttttctaaaggctcggaggaatttgtcttggtggttttaagtacaaattatgataatttgcatgtctatcgatctcaaagtctttgttggactg 33466218  T
Q  142 cttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactcag 232  Q
    ||||||| |||||||| | ||||||||| |||||||||||  | |||| |||||||||| ||||||||||||||||||| ||||| |||||    
T  33466217 cttattcgacaccacacaaggttgttgactttgttgttttaaataatatcatatatgttgtcactgacaaggccaacatagggatgctcag 33466127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 1204920 - 1204735
Alignment:
Q  39 ttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttggg 138  Q
    ||||||||||||  |||||  ||| |||||||| |||| |||||||||||||||| |||| ||||||||||||||||| |||| |||||| |||||||||    
T  1204920 ttacttgcttttgccagagattcaaaggaatttatcttagtggttttatgtagaaattctgacaatttgcatgtctataaatcccgaaattttggttggg 1204821  T
Q  139 ttacttattcaacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggat 226  Q
    |||||||||||||| |||| | ||||||||| ||||||||||||||||||||   ||||||| ||| |||| |||||||||| |||||    
T  1204820 ttacttattcaacatcacaaaaggttgttgactttgttgttttgcacaatac--aatatgttgtcattgacgaggccaacatagggat 1204735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 55773499 - 55773697
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    ||||||||| ||| ||||||  |||| |||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  55773499 cttgcttttgacaaaggctccaaggattttgtcttagtggctttatgtaaaagttctaacagtttgcatgtctatcaatctcgaaattttggttgggtta 55773598  T
Q  142 cttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactca 231  Q
    |||||||||||         |||   | | ||||||| ||||||||||||||||| || ||||||||| |||  |||||||||||||| ||||||||||    
T  55773599 cttattcaacaatgggatatccatggatgattgttgactttgttgttttgcacaacactatatatgttgtcaacgacaaggccaacatagggatactca 55773697  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 55837710 - 55837908
Alignment:
Q  42 cttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttggttgggtta 141  Q
    ||||||||| ||| ||||||  |||| |||||||| |||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  55837710 cttgcttttgacaaaggctccaaggattttgtcttagtggctttatgtaaaagttctaacagtttgcatgtctatcaatctcgaaattttggttgggtta 55837809  T
Q  142 cttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgggatactca 231  Q
    |||||||||||         |||   | | ||||||| ||||||||||||||||| || ||||||||| |||  |||||||||||||| ||||||||||    
T  55837810 cttattcaacaatgggatatccatggatgattgttgactttgttgttttgcacaacactatatatgttgtcaacgacaaggccaacatagggatactca 55837908  T

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Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 216
Target Start/End: Original strand, 40026723 - 40026916
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||||||| |||||||||  || | | || |||||||||||||||||||||| ||| | ||||||||  |  ||||||||||||||||||||||||  |    
T  40026723 ccatgccttgcttgcttttggcaaatgatctgaggaatttgtcttggtggtttcatgcaaaagttctaggagattgcatgtctatcaatctcgaaattgt 40026822  T
Q  132 ggttgggttacttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggcca 216  Q
    ||||||||| ||||||| |||         | |   ||||||||||| ||||| |||||||| ||||  ||||||||| |||||||||||||||    
T  40026823 ggttgggttgcttattcgacaatgggaaatctagggagggttgttgactttgtggttttgcataatataatatatgttgtcactgacaaggcca 40026916  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 2418371 - 2418256
Alignment:
Q  33 catgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttg 132  Q
    |||| |||||||||||||  || | |||| || ||||||||||||||||||||||||| ||||||||  | ||||  |||||||||||||| ||||  ||    
T  2418371 catgtcttacttgcttttggcaaatgctcggatgaatttgtcttggtggttttatgtaaaagttctaggagtttgtgtgtctatcaatctcaaaattgtg 2418272  T
Q  133 gttgggttacttattc 148  Q
     |||||||||||||||    
T  2418271 attgggttacttattc 2418256  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 232
Target Start/End: Complemental strand, 49440953 - 49440744
Alignment:
Q  32 ccatgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatctt 131  Q
    ||||||| | |||||||||  || | |||| ||||||||||||||||||||||||||   |  |||||  | ||||||||||||||||||||| |||  |    
T  49440953 ccatgccctgcttgcttttggcaaatgctctgaggaatttgtcttggtggttttatgccaagattctatgagtttgcatgtctatcaatctcgtaattgt 49440854  T
Q  132 ggttgggttacttattcaaca---------ccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattg 222  Q
    ||||||||||||||||| |||         | |   ||||||||||| |||||  |||| || ||||  ||||||||  |||||||||||||||||||||    
T  49440853 ggttgggttacttattctacaatggaaaatcaagggagggttgttgactttgtgatttttcataatataatatatgtagtcactgacaaggccaacattg 49440754  T
Q  223 ggatactcag 232  Q
    || |||||||    
T  49440753 gggtactcag 49440744  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 229
Target Start/End: Original strand, 40140475 - 40140680
Alignment:
Q  33 catgccttacttgctttttacagaggctcagaggaatttgtcttggtggttttatgtagaagttctaacaatttgcatgtctatcaatctcgaaatcttg 132  Q
    ||||||||||||||||||  || |  ||| |  |||||||||| | |||||||||| | ||||||||  | ||||| |||||||||||||| ||||  ||    
T  40140475 catgccttacttgcttttggcaaatactctggtgaatttgtctcgttggttttatgcaaaagttctaggagtttgcgtgtctatcaatctcaaaattgtg 40140574  T
Q  133 gttgggttacttattc---------aacaccacatagggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacattgg 223  Q
    ||||||||||||||||         || ||||   ||||||||||| ||| | ||||| || ||||  ||||||||| ||||||||||||||||||| ||    
T  40140575 gttgggttacttattcgatagtggaaaaaccagggagggttgttgactttatggttttacataatataatatatgttgtcactgacaaggccaacatagg 40140674  T
Q  224 gatact 229  Q
    | ||||    
T  40140675 ggtact 40140680  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 49287012 - 49287059
Alignment:
Q  105 ttgcatgtctatcaatctcgaaatcttggttgggttacttattcaaca 152  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  49287012 ttgcatgtctatcaatctcgaaattgtggttgggttacttattcaaca 49287059  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 48178947 - 48179072
Alignment:
Q  104 tttgcatgtctatcaatctcgaaatcttggttgggttacttattcaacacc---acat------agggttgttgattttgttgttttgcacaataccata 194  Q
    |||||||||||||||||||||||||  |||||||||||||||||| ||| |   | ||      ||||||||||| ||||| |||||||| ||||  |||    
T  48178947 tttgcatgtctatcaatctcgaaattgtggttgggttacttattcgacaacgagagatgcagggagggttgttgactttgtagttttgcataatataata 48179046  T
Q  195 tatgttatcactgacaaggccaacat 220  Q
    |||||| ||||| |||| ||||||||    
T  48179047 tatgttgtcactaacaatgccaacat 48179072  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 47873545 - 47873604
Alignment:
Q  161 ggttgttgattttgttgttttgcacaataccatatatgttatcactgacaaggccaacat 220  Q
    ||||||||| ||||| |||||||| ||||  ||||||||| |||||||||||||||||||    
T  47873545 ggttgttgactttgtagttttgcataatatgatatatgttgtcactgacaaggccaacat 47873604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 41185592 - 41185640
Alignment:
Q  104 tttgcatgtctatcaatctcgaaatcttggttgggttacttattcaaca 152  Q
    |||||||||||||||||||| ||||  ||| ||||||||||||||||||    
T  41185592 tttgcatgtctatcaatctcaaaattgtggatgggttacttattcaaca 41185640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 49541007 - 49540963
Alignment:
Q  104 tttgcatgtctatcaatctcgaaatcttggttgggttacttattc 148  Q
    ||||| ||||||||||||| |||||  ||||||||||||||||||    
T  49541007 tttgcttgtctatcaatcttgaaattgtggttgggttacttattc 49540963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 148
Target Start/End: Complemental strand, 32347949 - 32347905
Alignment:
Q  104 tttgcatgtctatcaatctcgaaatcttggttgggttacttattc 148  Q
    |||||||||||||||||||||||||  ||| ||||||||||||||    
T  32347949 tttgcatgtctatcaatctcgaaattgtgggtgggttacttattc 32347905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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