View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_3 (Length: 541)
Name: NF3356_high_3
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 203 - 523
Target Start/End: Complemental strand, 11331786 - 11331457
Alignment:
| Q |
203 |
ttaaatttattactggtgtcgtcgtgt---------atgcggtggtgtttatatgtgtctgtatgattgcacgttagattcaagttgatttgtgattgtg |
293 |
Q |
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| T |
11331786 |
ttaaatttattactggtgtcgtcgtgtcagtgttgtatgcggtggtgtttatatgtgtctgtatgagtgcacgttagattcaagttgatgtgtgattgtg |
11331687 |
T |
|
| Q |
294 |
taggttttatgctgcggatgtacggagggagagttttgaggtgtttgataagtgtaaacggaaggtagtggtgactgcgaatccgacggtgatggtggat |
393 |
Q |
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| T |
11331686 |
taggttttatgctgcggatgtacggagggagagtttcgaggtgtttgataagtgtaaacggaaggtagtggtgactgcgaatccgacggtgatggtggat |
11331587 |
T |
|
| Q |
394 |
gcgtttgtgaaggattacctcggcggggataaggttttgggaacggagattgaggtgaatccgaagacgaagaaggcgactggatttgtgaagaagcccg |
493 |
Q |
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| T |
11331586 |
gcgtttgtgaaggattatctcggcggggataaggttttgggaacggagatcgaggtgaatccgaagacgaagaaggcgactggatttgtgaagaagcccg |
11331487 |
T |
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| Q |
494 |
gtgtgcttgttggagatttgaagcgtttgg |
523 |
Q |
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| T |
11331486 |
gtgtgcttgttggagatttgaagcgtttgg |
11331457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 131 - 191
Target Start/End: Original strand, 4987368 - 4987428
Alignment:
| Q |
131 |
tttaaaattataatgccatgtaggaggtgtacaaagtggtagagaaaaaaggaggtctatg |
191 |
Q |
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| T |
4987368 |
tttaaaattaaaatgccatgtaggaggtgtacaatgtggtagagaaaaaaggaggtctatg |
4987428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 13762123 - 13762053
Alignment:
| Q |
135 |
aaattataatgccatgtaggaggtgtacaaagtggtagagaa-aaaaggaggtctatgtatccttttcctt |
204 |
Q |
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| T |
13762123 |
aaattaaaatgccatgtaagaggtgtataaagtggtagagaaaaaaaggatgtttatttatcattttcctt |
13762053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 49201451 - 49201515
Alignment:
| Q |
136 |
aattataatgccatgtaggaggtgtacaaagtggtagagaaaaaaggaggtctatgtatcctttt |
200 |
Q |
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| T |
49201451 |
aattaaaatgccatgtaggaggtgtacaaagtggtagagaaaaaggtatgtctatgtatcatttt |
49201515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 136 - 203
Target Start/End: Original strand, 22531115 - 22531182
Alignment:
| Q |
136 |
aattataatgccatgtaggaggtgtacaaagtggtagagaaaaaaggaggtctatgtatccttttcct |
203 |
Q |
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| T |
22531115 |
aattaaaatgccatgtaggaggtgtacaaagtggtagagaaaaaggtatgtttatgtatctttttcct |
22531182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 135 - 202
Target Start/End: Complemental strand, 14117619 - 14117551
Alignment:
| Q |
135 |
aaattataatgccatgtaggaggtgtacaaagtggtagagaa-aaaaggaggtctatgtatccttttcc |
202 |
Q |
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| T |
14117619 |
aaattaaaatgccatgtaagaggtgtataaagtggtagagaaaaaaaggatgtttatgtatccttttcc |
14117551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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