View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_high_37 (Length: 201)
Name: NF3356_high_37
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_37 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 37347735 - 37347924
Alignment:
| Q |
1 |
gcacgattggcagctacacaggttgttcgttacgagaaagcaaatgctccaattctttgcatttgtgaagatgaagagccaatggagttttgggttgctc |
100 |
Q |
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| T |
37347735 |
gcacgatcggcagctacacaggttgttcgttacgagaaagcaaatgctccaattctttgcatttgtgaagatgaagagccaatggagttttgggttgctc |
37347834 |
T |
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| Q |
101 |
tttctaaccagcaattattgttggggagttctgataagaaagaggtgttgggaaaggattctgatgaaagaatggagattgatggtgatg |
190 |
Q |
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| T |
37347835 |
tttctaaccagcaattattgttggggagttctgataagaaagaggtgttgggaaaggattctgatgaaagaatggagattgatggtgatg |
37347924 |
T |
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Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 48621573 - 48621699
Alignment:
| Q |
12 |
agctacacaggttgttcgttacgagaaagcaaatgctccaattctttgcatttgtgaagatgaagagccaatggagttttgggttgctctttctaaccag |
111 |
Q |
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| T |
48621573 |
agctacagaggttatgcgttatgcgaaagaaagggctccaattctttgcatttgtgaagatcaagagccaatggagtttttggttgctcttaccaaccag |
48621672 |
T |
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| Q |
112 |
caattattgttggggagttctgataag |
138 |
Q |
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| T |
48621673 |
caaccattgtttgggaattctgataag |
48621699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 138
Target Start/End: Complemental strand, 50071649 - 50071562
Alignment:
| Q |
51 |
aattctttgcatttgtgaagatgaagagccaatggagttttgggttgctctttctaaccagcaattattgttggggagttctgataag |
138 |
Q |
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| T |
50071649 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttgctatttccaatcaacaactattgttggggagttctcataag |
50071562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 51 - 138
Target Start/End: Original strand, 17116165 - 17116252
Alignment:
| Q |
51 |
aattctttgcatttgtgaagatgaagagccaatggagttttgggttgctctttctaaccagcaattattgttggggagttctgataag |
138 |
Q |
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| T |
17116165 |
aattctttgtatttgtgaagatgaagagccaatggagctttgggttgatgtttccaatcaacaactattgttggggagttctcataag |
17116252 |
T |
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