View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3356_high_5 (Length: 520)
Name: NF3356_high_5
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 510
Target Start/End: Original strand, 44851416 - 44851897
Alignment:
| Q |
19 |
caagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaactaaatatag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851416 |
caagttacaaatgaagaaaattttcattacttacaatctacaacacactgctcagaggacatcattatagaccaagaagatcctttcaaactaaatatag |
44851515 |
T |
|
| Q |
119 |
aaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcagaagaatttga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851516 |
aaaaaagccatattgacaaaatagatcttctcttagaggaagagccactctgctatgcacagttaaagaatatgtcagcatctaaatcagaagaatttga |
44851615 |
T |
|
| Q |
219 |
ttttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgccccttcttga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851616 |
ttttttcgatgagcttgaggagttacctatgtcttcatctattttacactttacgaggagcattttttctgatgaaaggattcctgttgccccttcttga |
44851715 |
T |
|
| Q |
319 |
ttgattcaagtgnnnnnnnnnnatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatcccacatatcaatt |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44851716 |
ttgatt----------ttttttatgtgtctgttgtctagaagaatgtaacaaaatgtattgttcatatatcgcatgctacaaacatcccacatatcaatt |
44851805 |
T |
|
| Q |
419 |
tcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccttactgacacgcaatactacgtccctaccctttg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
44851806 |
tcaggtagtttttaaatttggcatctttctatttcccacctttatttatatccatcccatactgacacgcaatactacgtccctaccctttg |
44851897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University