View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3356_high_6 (Length: 499)
Name: NF3356_high_6
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_high_6 |
 |  |
|
| [»] scaffold0464 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr3 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 18 - 488
Target Start/End: Original strand, 32579555 - 32580027
Alignment:
| Q |
18 |
gatgatgcttaacggagcctcgagcaaatgagttacgggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32579555 |
gatgatgcttaacggagcctcgagcaaatgagttacaggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcg |
32579654 |
T |
 |
| Q |
118 |
aggtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32579655 |
aggtgggtgttccgtggcgatcgatgaagatgaaatttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca |
32579754 |
T |
 |
| Q |
218 |
taagagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggaggagagacgttggagcgccgaagtttgaatgcggtggaggatcgga |
317 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32579755 |
taagagttttgacaggaaggcgtgataggatttccacgatgagttcatcaaggaggagagacgttggagcgccgaagtttgaatgcggtggaggatcgga |
32579854 |
T |
 |
| Q |
318 |
attcgtcat--gaggcaagtatgctggtgactgtgaagattgcgatgatttgtttttgaaatttgagatcgaagtacagtgttgaagatgaaggaatgga |
415 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32579855 |
attcgtcatgagaggcaagtatgctggtgactgtgaagattgcgatgatttgttgttgaaatttgagatcgaagtacagtgttgaagatgaaggaatgga |
32579954 |
T |
 |
| Q |
416 |
ttaaagttgattcaaaaggatcgtctttgttgcttctgactatggattagaatggaactgtatattttttcat |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
32579955 |
ttaaagttgattcaaaaggatcgtctttgttgctttggactatggattagaatggaactctgtattttttcat |
32580027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 118 - 274
Target Start/End: Original strand, 12735613 - 12735769
Alignment:
| Q |
118 |
aggtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca |
217 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12735613 |
aggtgggtgttccgaggcgatcgccgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcaaacacatttgaattgca |
12735712 |
T |
 |
| Q |
218 |
taagagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
| | ||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||| |
|
|
| T |
12735713 |
tcaaagttttgacaggaagtcgtgaaagaatttctacgataagttcatcaagaagga |
12735769 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 26 - 401
Target Start/End: Complemental strand, 19778968 - 19778585
Alignment:
| Q |
26 |
ttaacggagcctcgagcaaatgagttacgggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcgaggtgggt |
125 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||| || |||||||||| | || |||||| | ||| ||||||||| | ||||||||| || |
|
|
| T |
19778968 |
ttaacggagcctcaagcaaatgacttacgggaaagggtaccacactgcaattggactggtcttcagac---gacaggtctgaaaccagtgcgaggtgtgt |
19778872 |
T |
 |
| Q |
126 |
gttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataagagtt |
225 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19778871 |
gttccgctgcgatcgctgaagatgcagtttggcgaaggaaggatcatgagaaattagggttttccaagatttgcaaacacatttgaattgcataagagtt |
19778772 |
T |
 |
| Q |
226 |
ttgacaggaagccgtgataggatttccacgatgagttcatcaaggaggagagacgttggagcgccgaagtttgaatgc---------ggtggaggatcgg |
316 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||||||||||||| ||||| ||||| ||| |||||||| || |||||||||| |
|
|
| T |
19778771 |
ttgacaggaagtcgtgacaggatgtctgtgatgagttcatcaaggaggattgacgtcggagcaccgccacttgaatgcggatgctttggcggaggatcgg |
19778672 |
T |
 |
| Q |
317 |
aattcgtcat--gaggcaagtatgctggtgactgtgaagattgcgatgatttgtttttgaaatttgagatcgaagtacagtgttgaa |
401 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19778671 |
aattcgtcatgagaggcaagtatgctggtgactatgaagattgcaacaatttgtggttgaaatttgagatcgaagtacagtgttgaa |
19778585 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 26 - 287
Target Start/End: Original strand, 19888415 - 19888673
Alignment:
| Q |
26 |
ttaacggagcctcgagcaaatgagttacgggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcgaggtgggt |
125 |
Q |
| |
|
||||||||||||| | ||||||| |||| |||||||| ||||||||| ||| | |||||| || | ||| |||||||||||| | || |||||| || |
|
|
| T |
19888415 |
ttaacggagcctcaatcaaatgacttaccggaaagggtacgacactgaaattggactcgtcgtcag--atg-accggtctgaaaccagtgtgaggtgtgt |
19888511 |
T |
 |
| Q |
126 |
gttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataagagtt |
225 |
Q |
| |
|
|||||| ||||| || |||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19888512 |
gttccgcggcgaacgctgaagatggagtttggcgaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataagagtt |
19888611 |
T |
 |
| Q |
226 |
ttgacaggaagccgtgataggatttccacgatgagttcatcaaggaggagagacgttggagc |
287 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19888612 |
ttgacaggaagtcgtgacaggatatccacgatgagttcatcaaggaggagagatgttggagc |
19888673 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 19879548 - 19879796
Alignment:
| Q |
21 |
gatgcttaacggagcctcgagcaaatgagttacgggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcgagg |
120 |
Q |
| |
|
|||| |||| ||| ||| ||||||| || | || ||||| || ||||||||||||||| |||||||| | ||||||||| ||||| ||||| | | |
|
|
| T |
19879548 |
gatggttaatggatcctggagcaaacgactaacaggaaatggtacgacactgcaatccaactcgtctttagatgtggaccggtttgaaaccattgctaag |
19879647 |
T |
 |
| Q |
121 |
tgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataa |
220 |
Q |
| |
|
|| ||||||| || |||||||||||||||| |||||| ||| | |||| | ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
19879648 |
tgtgtgttccacggggatcgatgaagatgcaatttggctaaggcaggatta---gaaattagggttttccaagatttgcaaacacatttgaattgcataa |
19879744 |
T |
 |
| Q |
221 |
gagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggag |
272 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || |||||||||||||||||| |
|
|
| T |
19879745 |
gagttttgacaggaagtcgtgaaaggatgtctgtgatgagttcatcaaggag |
19879796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 101 - 238
Target Start/End: Original strand, 19351776 - 19351913
Alignment:
| Q |
101 |
ggtctgaaagtattgcgaggtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgca |
200 |
Q |
| |
|
||||||||| || ||| ||||||||||||||| |||| || | ||| |||| ||||| |||| ||||||| |||||| |||||| |||||||||| || |
|
|
| T |
19351776 |
ggtctgaaaatagtgctaggtgggtgttccgtcgcgaccggtaaaggtgcaatttggtgaaggaaggatcatgagaaatcagggttgtccatgatttaca |
19351875 |
T |
 |
| Q |
201 |
aacacatttgaattgcataagagttttgacaggaagcc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19351876 |
aacacatttgaattgcataagagttttgacaggaagcc |
19351913 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 101 - 274
Target Start/End: Complemental strand, 19357222 - 19357049
Alignment:
| Q |
101 |
ggtctgaaagtattgcgaggtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgca |
200 |
Q |
| |
|
|||||||||||| ||| || |||||||| | | ||| || ||||| |||| ||||| |||| | ||||| |||||| |||||||||||||||||||| |
|
|
| T |
19357222 |
ggtctgaaagtagtgctagatgggtgttacatctcgaccggtgaaggtgcaatttggtgaaggaagaatcatgagaaataagggttttccatgatttgca |
19357123 |
T |
 |
| Q |
201 |
aacacatttgaattgcataagagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
||| |||||||||||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
19357122 |
aacgcatttgaattgcatcagagttttgacgggaagccgcgatagaatttcagtgatgagttcatcaaagagga |
19357049 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 19721304 - 19721198
Alignment:
| Q |
142 |
tgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataagagttttgacaggaagccgtg |
241 |
Q |
| |
|
|||||| ||| |||||||||| |||||||| || |||||||||||| |||||||||| |||||||| | |||||| |||||||||| |||||| |||| |
|
|
| T |
19721304 |
tgaagacgcactttggcgaaggcgggatca---gagattagggttttcaatgatttgcagacacatttcatttgcatcagagttttgaaaggaaggcgtg |
19721208 |
T |
 |
| Q |
242 |
ataggatttc |
251 |
Q |
| |
|
|||||||||| |
|
|
| T |
19721207 |
ataggatttc |
19721198 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 19598585 - 19598681
Alignment:
| Q |
178 |
attagggttttccatgatttgcaaacacatttgaattgcataagagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| ||||| || |||||||| |||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
19598585 |
attagggttttccatgacttgcagacgcatttgaattgcacaagagaatttacaggaaggaatgataggatttcaacgataagttcatcagggagga |
19598681 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 21 - 287
Target Start/End: Complemental strand, 14748767 - 14748505
Alignment:
| Q |
21 |
gatgcttaacggagcctcgagcaaatgagttacgggaaagggcacgacactgcaatccgtctcgtcttcggtgatggaccggtctgaaagtattgcgagg |
120 |
Q |
| |
|
|||| ||||||||||||||||||||| | |||| | || || |||||||| |||| | |||||| || | |||| | ||| ||||| | ||||||| |
|
|
| T |
14748767 |
gatgattaacggagcctcgagcaaattacttactgagaaaggtacgacactaaaatcagactcgtcctcagacatggtctggtatgaaaccagtgcgagg |
14748668 |
T |
 |
| Q |
121 |
tgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataa |
220 |
Q |
| |
|
|| |||||||| |||||| |||||||||| |||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14748667 |
tgtgtgttccg---cgatcgctgaagatgca-tttggcaaaggaaggatcatgagaaattagggttttccatgatttgcaaacacatttgaattgcataa |
14748572 |
T |
 |
| Q |
221 |
gagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggaggagagacgttggagc |
287 |
Q |
| |
|
||||||||||||| || ||||| | || ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14748571 |
gagttttgacagggagtcgtgacaagaattccacgataagttcatcaaggaggagagacgttggagc |
14748505 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 118 - 274
Target Start/End: Complemental strand, 7317 - 7161
Alignment:
| Q |
118 |
aggtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgca |
217 |
Q |
| |
|
|||||||||||||| |||||||| ||||| |||||||| |||||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7317 |
aggtgggtgttccgaggcgatcgctgaaggtgcagtttagcgaaggaaggatcatgagagattagggttttccatgatttgcagacacatttgaattgca |
7218 |
T |
 |
| Q |
218 |
taagagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
| ||||||||||||||||| ||||| || ||||| ||||| ||||| ||||| |||| |
|
|
| T |
7217 |
tcagagttttgacaggaagtcgtgaaagaatttctacgataagttcgtcaagaagga |
7161 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 121 - 274
Target Start/End: Original strand, 18909593 - 18909743
Alignment:
| Q |
121 |
tgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataa |
220 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| ||||||||||| || || |||||||||||||||| ||||||||||||| ||||| | |||||| | |
|
|
| T |
18909593 |
tgggtgttccgtggtgatcggtgaaggtgcaatttggcgaagaaagg---atgagaaattagggttttcaatgatttgcaaacgcatttcatttgcatca |
18909689 |
T |
 |
| Q |
221 |
gagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||||| ||||| |||| |
|
|
| T |
18909690 |
gagttttgacaggaagtcgtgaaaggatttctgcgatgagttcgtcaagaagga |
18909743 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 274
Target Start/End: Original strand, 18921488 - 18921639
Alignment:
| Q |
120 |
gtgggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcata |
219 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |||| ||||| |||| | ||||||||||||||| ||||||||||||| ||||| | |||||| |
|
|
| T |
18921488 |
gtgggtgttccgcggcgatcgatgaaggtgcattttgacgaaggaaggatga---gaaattagggttttcaatgatttgcaaacgcatttcatttgcatc |
18921584 |
T |
 |
| Q |
220 |
agagttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| ||||||| |||||||| |||| |
|
|
| T |
18921585 |
agagtttttactggaagacgtgaaaggatttctgcgatgagctcatcaagaagga |
18921639 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 123 - 274
Target Start/End: Original strand, 18914343 - 18914491
Alignment:
| Q |
123 |
ggtgttccgtggcgatcgatgaagatgcagtttggcgaagacgggatcatcagaaattagggttttccatgatttgcaaacacatttgaattgcataaga |
222 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||| ||||| |||| | ||||||||||||||| ||||||||||||| ||||| | |||||| ||| |
|
|
| T |
18914343 |
ggtgtttcgtggtgatcgatgaaggtgcaatttgacgaaggaaggatga---gaaattagggttttcaatgatttgcaaacgcatttcatttgcatcaga |
18914439 |
T |
 |
| Q |
223 |
gttttgacaggaagccgtgataggatttccacgatgagttcatcaaggagga |
274 |
Q |
| |
|
|||||||||||||| || || |||||||| | || ||||||||||| |||| |
|
|
| T |
18914440 |
gttttgacaggaagtcgagaaaggatttctgcaataagttcatcaagaagga |
18914491 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 20578961 - 20579004
Alignment:
| Q |
171 |
atcagaaattagggttttccatgatttgcaaacacatttgaatt |
214 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
20578961 |
atcagagattagggttttccatgatttgcaaacacgtttcaatt |
20579004 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 42693709 - 42693665
Alignment:
| Q |
171 |
atcagaaattagggttttccatgatttgcaaacacatttgaattg |
215 |
Q |
| |
|
|||||| ||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42693709 |
atcagagattagagttttccatgatttgcagacacatttgaattg |
42693665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 43907728 - 43907684
Alignment:
| Q |
171 |
atcagaaattagggttttccatgatttgcaaacacatttgaattg |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
43907728 |
atcagagattagggttttccatgatttgcaaacacacttgtattg |
43907684 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 203
Target Start/End: Original strand, 19568064 - 19568093
Alignment:
| Q |
174 |
agaaattagggttttccatgatttgcaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19568064 |
agaaattagggttttccatgatttgcaaac |
19568093 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 43986912 - 43986949
Alignment:
| Q |
178 |
attagggttttccatgatttgcaaacacatttgaattg |
215 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43986912 |
attagggttttccatgatttgcaaatgcatttgaattg |
43986949 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 8838500 - 8838538
Alignment:
| Q |
175 |
gaaattagggttttccatgatttgcaaacacatttgaat |
213 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
8838500 |
gaaaatagggttttccatgatttgcaaacacacttgaat |
8838538 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University