View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_1 (Length: 785)

Name: NF3356_low_1
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_1
NF3356_low_1
[»] chr2 (13 HSPs)
chr2 (14-777)||(43131129-43131868)
chr2 (19-103)||(44065744-44065828)
chr2 (14-99)||(4978776-4978861)
chr2 (14-99)||(4996684-4996769)
chr2 (22-90)||(7304352-7304420)
chr2 (14-109)||(27896467-27896562)
chr2 (18-108)||(1870509-1870598)
chr2 (21-108)||(13738410-13738497)
chr2 (58-120)||(36766699-36766764)
chr2 (31-93)||(38193709-38193772)
chr2 (22-108)||(13835849-13835934)
chr2 (18-108)||(34501609-34501698)
chr2 (615-676)||(43130447-43130508)
[»] chr1 (17 HSPs)
chr1 (24-108)||(27513-27596)
chr1 (23-117)||(39238844-39238938)
chr1 (22-99)||(33148155-33148232)
chr1 (16-108)||(34382648-34382739)
chr1 (28-108)||(35876767-35876847)
chr1 (54-120)||(35873495-35873561)
chr1 (23-108)||(11449073-11449158)
chr1 (35-108)||(31160752-31160824)
chr1 (18-140)||(33148907-33149027)
chr1 (14-99)||(49731186-49731271)
chr1 (35-103)||(28490669-28490736)
chr1 (21-76)||(46295918-46295973)
chr1 (18-76)||(13969146-13969204)
chr1 (21-75)||(38597491-38597545)
chr1 (19-76)||(26890115-26890172)
chr1 (20-73)||(31884510-31884563)
chr1 (20-73)||(50127398-50127451)
[»] scaffold0299 (1 HSPs)
scaffold0299 (18-108)||(18031-18122)
[»] chr5 (12 HSPs)
chr5 (18-90)||(28511182-28511255)
chr5 (18-108)||(6102837-6102926)
chr5 (18-108)||(16802036-16802125)
chr5 (21-103)||(30840618-30840699)
chr5 (19-108)||(12036323-12036411)
chr5 (20-73)||(7609590-7609643)
chr5 (31-76)||(14044727-14044772)
chr5 (42-93)||(2835650-2835701)
chr5 (20-75)||(14863346-14863401)
chr5 (18-108)||(3600119-3600208)
chr5 (19-108)||(14152487-14152576)
chr5 (23-108)||(11815924-11816009)
[»] chr4 (23 HSPs)
chr4 (14-108)||(34236184-34236278)
chr4 (18-108)||(16831116-16831205)
chr4 (18-104)||(55090789-55090874)
chr4 (22-83)||(48202497-48202558)
chr4 (21-108)||(20775083-20775170)
chr4 (14-108)||(51100041-51100136)
chr4 (18-108)||(53142789-53142879)
chr4 (24-76)||(2565458-2565510)
chr4 (14-93)||(44740877-44740957)
chr4 (23-108)||(5645662-5645747)
chr4 (14-76)||(12094962-12095024)
chr4 (14-108)||(50101295-50101389)
chr4 (23-76)||(2824863-2824916)
chr4 (23-76)||(19480550-19480603)
chr4 (38-107)||(32325053-32325121)
chr4 (19-103)||(19248898-19248981)
chr4 (22-110)||(41142307-41142395)
chr4 (29-108)||(4860137-4860215)
chr4 (18-108)||(9119249-9119339)
chr4 (20-75)||(31647731-31647786)
chr4 (14-76)||(27284076-27284138)
chr4 (35-104)||(14347141-14347209)
chr4 (51-108)||(45921354-45921411)
[»] chr8 (14 HSPs)
chr8 (18-108)||(18131200-18131289)
chr8 (21-108)||(3137411-3137498)
chr8 (15-81)||(30924208-30924273)
chr8 (35-108)||(40607324-40607396)
chr8 (29-108)||(4989715-4989793)
chr8 (14-108)||(32881117-32881211)
chr8 (22-108)||(34678222-34678307)
chr8 (14-71)||(44655286-44655343)
chr8 (52-108)||(33621408-33621464)
chr8 (21-108)||(18200696-18200783)
chr8 (21-76)||(43917598-43917653)
chr8 (23-73)||(6270199-6270249)
chr8 (28-98)||(20821908-20821978)
chr8 (55-108)||(10451944-10451997)
[»] chr6 (13 HSPs)
chr6 (18-76)||(10008201-10008259)
chr6 (23-99)||(2911491-2911567)
chr6 (29-108)||(9213059-9213135)
chr6 (29-108)||(2613367-2613448)
chr6 (14-108)||(5611144-5611238)
chr6 (22-76)||(18493255-18493309)
chr6 (14-76)||(27082315-27082377)
chr6 (35-108)||(28048756-28048828)
chr6 (18-108)||(32800212-32800303)
chr6 (18-72)||(12677828-12677882)
chr6 (14-72)||(19659665-19659723)
chr6 (22-108)||(20208028-20208113)
chr6 (22-108)||(22102051-22102136)
[»] chr7 (18 HSPs)
chr7 (20-117)||(47445362-47445459)
chr7 (18-108)||(8656302-8656393)
chr7 (18-104)||(47537434-47537519)
chr7 (14-73)||(37928304-37928363)
chr7 (21-99)||(16979953-16980031)
chr7 (31-97)||(41760365-41760431)
chr7 (23-108)||(8896613-8896698)
chr7 (19-108)||(24937841-24937929)
chr7 (18-90)||(34834703-34834773)
chr7 (14-73)||(23142702-23142762)
chr7 (27-99)||(34993152-34993224)
chr7 (23-75)||(45907082-45907134)
chr7 (18-108)||(39786467-39786557)
chr7 (22-108)||(39386917-39387003)
chr7 (27-76)||(23317845-23317894)
chr7 (55-108)||(25780245-25780298)
chr7 (23-76)||(33988492-33988545)
chr7 (15-99)||(46300678-46300762)
[»] chr3 (14 HSPs)
chr3 (23-99)||(29032425-29032501)
chr3 (21-73)||(48338824-48338876)
chr3 (14-92)||(4490785-4490862)
chr3 (23-108)||(34228273-34228357)
chr3 (22-107)||(54801346-54801431)
chr3 (19-75)||(15671165-15671221)
chr3 (36-108)||(41287898-41287969)
chr3 (22-97)||(2379631-2379705)
chr3 (20-75)||(35322019-35322074)
chr3 (14-108)||(42788343-42788438)
chr3 (19-73)||(4020107-4020161)
chr3 (14-72)||(37043037-37043095)
chr3 (14-108)||(55446737-55446830)
chr3 (18-71)||(31069612-31069665)
[»] scaffold0039 (1 HSPs)
scaffold0039 (22-76)||(30034-30088)


Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 14 - 777
Target Start/End: Complemental strand, 43131868 - 43131129
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaagg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  43131868 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaatttttattcaagg 43131769  T
Q  114 attcttttaactagtagcaagacccttaaactagcagcagtaatgtcttattggatagttccactccacttaaacatagtagccagtgaatgtaaatcct 213  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43131768 attcttt-aactagtagcaagacccttaaactagcagcagtaatgtcttattggatagttccactccacttaaacatagtagccagtaaatgtaaatcct 43131670  T
Q  214 ctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttctccatgtttaactcattcatgttattca 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131669 ctgccaactatctcacccccacaataccaaagataacactcaagtccgaataaagcagctgtgccaattttctccatgtttaactcattcatgttattca 43131570  T
Q  314 ttatgttcttagcagagtccaattccctccagaatgaatcgtaacgatgaggaatactgcnnnnnnnnnnnnnnnntaacaagttcaataaatatttcct 413  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||                 |||||||||||||| |||||||||    
T  43131569 ttatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg-------taaaacaaaataacaagttcaatatatatttcct 43131477  T
Q  414 ccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatatatgcaacaaacctggcaagtcgagtatagaacaattgtttggctagt 513  Q
    ||              |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43131476 cc--------------gtctcattttagttgtacgtaattcattc--atatatatgcaacaaacctggcaagtcgagtatagaacaattgtttggccagt 43131393  T
Q  514 gattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctccatcaacagcttgaaatgtgaatttatatggtttgccacttctgctg 613  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43131392 gattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctccatcaacagcttgaaatgtgaatttatatggtttgccacttctgctg 43131293  T
Q  614 atgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaattatattaagatatataaggttcaaaaatttattcaa 713  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  43131292 atgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaattatattaagatatatatgggtcaaaaatttattcaa 43131193  T
Q  714 atctcatcattctgtttttcttttaaatttccacacacaaaccttgctgtatgagtcacctttg 777  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43131192 atctcatcattctgtttttcttttaaatttccacacacaaaccttgttgtatgagtcacctttg 43131129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 44065828 - 44065744
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 103  Q
    ||||||||||||||| ||| || ||||| ||||||| |||||||||| || ||||||| ||||||||||||| ||| ||||||||    
T  44065828 aaccaaaacaagtaactttgtacaaaaaagtagtgtgattattacttcattaaaagtaaaaacttacattttcaaggcaaatttt 44065744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 4978861 - 4978776
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||| |||||| || |||||||||||||||| || ||||||| ||||||||||||||||||  | |||| ||||| ||||||||    
T  4978861 taaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaa 4978776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 4996769 - 4996684
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||| |||||| || |||||||||||||||| || ||||||| ||||||||||||||||||  | |||| ||||| ||||||||    
T  4996769 taaacatccaaaataaataagtttttataaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaa 4996684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 7304420 - 7304352
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttt 90  Q
    |||||||| |||| ||||||||||| |||||||||||||||||| || |||| || |||||||||||||    
T  7304420 caaaacaaataagattttataaaaacgtagtgtaattattacttcattaaaaataaaaacttacatttt 7304352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 27896467 - 27896562
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattc 109  Q
    ||||||||||||| ||||||||||| || |||| || ||||||||||||||  ||||||||||  | |||| |||| ||| ||||||||| |||||    
T  27896467 taaacaaccaaaataagtaagttttaattaaaaagttgtgtaattattactaaatcaaaagtaacagcttatatttctaaaacaaattttctattc 27896562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 1870598 - 1870509
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||| ||||||||||| ||||||||||||  | ||||||||||||||| |||||||||  || |||| ||||| |||||||||||| ||||    
T  1870598 caacaaaaacaagtaactttttataaaaaaat-gtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattttctatt 1870509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 13738497 - 13738410
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||  | |||| ||||| || ||||| ||||||||    
T  13738497 ccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttatt 13738410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 58 - 120
Target Start/End: Complemental strand, 36766764 - 36766699
Alignment:
Q  58 tattacttgatcaaaagtataaactt---acatttttaagacaaattttttattcaaggattcttt 120  Q
    |||||||||||||||||||  |||||   ||||||| ||||||||||||||||||| |||||||||    
T  36766764 tattacttgatcaaaagtaacaacttgttacattttcaagacaaattttttattcatggattcttt 36766699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 38193772 - 38193709
Alignment:
Q  31 taagtttttat-aaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaa 93  Q
    ||||||||||| ||||| ||||||||||||||| || ||||||| || ||||||||||||||||    
T  38193772 taagtttttatgaaaaaagtagtgtaattattatttcatcaaaaataaaaacttacatttttaa 38193709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 13835849 - 13835934
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| || ||| ||||||||||||  ||||||||||||||||| || ||||||  ||||||| ||||| |||||| ||||| ||||    
T  13835849 caaaataaataattttttataaaaaa-tagtgtaattattacttaataaaaagtcaaaacttatattttcaagacagattttctatt 13835934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 34501698 - 34501609
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||| ||| ||| ||||||||||||  | ||||||||||||||| || |||| |  ||| ||| ||||||||||||| |||||||||    
T  34501698 caaccaaatcaaataactttttataaaaaatt-gtgtaattattacttaataaaaaatcaaaaattatatttttaagacaacttttttatt 34501609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 676
Target Start/End: Complemental strand, 43130508 - 43130447
Alignment:
Q  615 tgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa 676  Q
    |||||||||| ||||| ||||||||| |||||||||||| |||||   || |||||||||||    
T  43130508 tgcttgagtcacctttaattgcagctgaggaatctttgaagtcattagttcactatacaaaa 43130447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 24 - 108
Target Start/End: Original strand, 27513 - 27596
Alignment:
Q  24 aaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||||||    
T  27513 aaacaagtaactttttataaaaag-tagtgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttatt 27596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 39238844 - 39238938
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattc 117  Q
    ||||||||||||||||||  ||||  ||||||||| |||||||||||||| |||  ||||||||||||||||| ||| |||||||| | ||||||    
T  39238844 aaaacaagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattc 39238938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 33148232 - 33148155
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||||||||||||||||| ||||  | ||||||| ||||||||||||||||||  | |||| ||||||||||||||    
T  33148232 caaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaa 33148155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 34382739 - 34382648
Alignment:
Q  16 aacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| |||||||||||| ||||||||||||| | |||||||||||  || ||||||| |  ||||||| |||||||||| ||||||||||||    
T  34382739 aacaatcaaaacaagtaactttttataaaaagtt-gtgtaattattgtttaatcaaaaattaaaacttatatttttaagataaattttttatt 34382648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 35876767 - 35876847
Alignment:
Q  28 aagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| ||||||||||||  |||||| ||| || ||| |||||||||  ||||||| |||||||||||||||||||||||    
T  35876767 aagtaactttttataaaaaaatagtgttattgttccttaatcaaaagttaaaacttatatttttaagacaaattttttatt 35876847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 35873495 - 35873561
Alignment:
Q  54 taattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattcttt 120  Q
    |||||||||||| || ||||||| ||| ||||||||| ||||||||||||||||| || ||||||||    
T  35873495 taattattacttcatgaaaagtaaaaatttacattttgaagacaaattttttatttaaagattcttt 35873561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 11449073 - 11449158
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||| |||||||||||||| |||| ||  |||||||||||| ||||||||| ||  |  ||| |||||||||||||||||||||||    
T  11449073 aaaataagtaagtttttatgaaaaagttatgtaattattacatgatcaaaattaacatattatatttttaagacaaattttttatt 11449158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 31160752 - 31160824
Alignment:
Q  35 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||  | |||||||||||||| |||||||||  ||| ||| |||||||||||||||||| ||||    
T  31160752 tttttataaaaagtga-tgtaattattacttaatcaaaagtcaaaatttatatttttaagacaaattttctatt 31160824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 33148907 - 33149027
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattc 117  Q
    |||| |||| |||||||||||||  |||| |||||||||||||||||||||    ||||  ||||||| |||| |||||||||||| || | | ||||||    
T  33148907 caactaaaataagtaagtttttaataaaaagtagtgtaattattacttgat---tagtaacaacttactttttcaagacaaattttctacttatggattc 33149003  T
Q  118 ttttaact-agtagcaagaccctt 140  Q
    ||| | || | |||||||||||||    
T  33149004 tttaacctgattagcaagaccctt 33149027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 49731271 - 49731186
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||||| ||||||||||||||||||  |||| ||||| ||||||||| ||| ||||| |||  | ||||||| || ||||||||    
T  49731271 taaacaactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaatgtaacatcttacatcttcaagacaaa 49731186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 28490736 - 28490669
Alignment:
Q  35 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 103  Q
    ||||||||||||| | ||||||||||||||| | ||||| |  ||||||| ||||||||||||||||||    
T  28490736 tttttataaaaagtt-gtgtaattattacttaagcaaaaatcaaaacttatatttttaagacaaatttt 28490669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 46295973 - 46295918
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||| ||||||||||| |||| || |||| || ||||||||||||||||||    
T  46295973 ccaaaacaaataagtttttatgaaaaagttgtgtcatgattacttgatcaaaagta 46295918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 13969204 - 13969146
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||||||||||||||||||| ||||  | ||||||| ||||||| || |||||||    
T  13969204 caaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagta 13969146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 38597491 - 38597545
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    |||||||||||||||||| ||||||| || || |||| ||||||| |||||||||    
T  38597491 ccaaaacaagtaagttttaataaaaaagttgtctaatcattacttaatcaaaagt 38597545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 26890172 - 26890115
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||||||||||||||||||||   |||||||||||| || ||  |||||||||    
T  26890172 aaccaaaacaagtaagtttttataaatgagtagtgtaattaatagttagtcaaaagta 26890115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 31884563 - 31884510
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||| ||||| ||||    
T  31884563 accaaaaaaagtaagtttttattaaaaagtaatgtaattattatttgataaaaa 31884510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 50127451 - 50127398
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||| ||| ||||    
T  50127451 accaaaagaagtaagtttttattaaaaagtaatgtaattattactcgataaaaa 50127398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 18122 - 18031
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaag-gtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||||| ||||||||||||  || ||||||||||||||| |||||||||  ||||||| |||||||||| ||||||| ||||    
T  18122 caaccaaaacaagtaactttttataaaaaaagttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatt 18031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 8e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 28511255 - 28511182
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaag-gtagtgtaattattacttgatcaaaagtataaacttacatttt 90  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||| || |||||||||| |||||||||||||    
T  28511255 caaccaaaacatgtaagtttttataaaaaaagtagtgtaattattaattcatcaaaagtaaaaacttacatttt 28511182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 6102837 - 6102926
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||| |||||| ||||||| ||||| || |||||||||||||| |||||||||  ||||||| ||||| |||||||||||| ||||    
T  6102837 caaccaaaataagtaactttttattaaaag-tattgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttctatt 6102926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 16802036 - 16802125
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||| ||| ||||||||||||| || |||||||||||||| |||||||||  ||| ||| ||||| |||||||||||| ||||    
T  16802036 caaccaaaacaaataactttttataaaaag-taatgtaattattacttaatcaaaagtcaaaatttatattttcaagacaaattttctatt 16802125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 30840699 - 30840618
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 103  Q
    |||||||||||||||||| | |||||| | ||||||| ||||||||||||||||||  | |||| ||||| ||||||||||||    
T  30840699 ccaaaacaagtaagttttcaaaaaaagtt-gtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaatttt 30840618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 12036411 - 12036323
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||| || ||| ||||||| ||||| || |||||||||||||| |||||||||  ||||||| ||||| |||||||||||| ||||    
T  12036411 aaccaaaataaataactttttattaaaag-taatgtaattattacttaatcaaaagtcaaaacttatattttcaagacaaattttctatt 12036323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 7609643 - 7609590
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    ||||||| |||||||||||||| |||| ||| ||||||||||||||||| ||||    
T  7609643 accaaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaa 7609590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 14044772 - 14044727
Alignment:
Q  31 taagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||||||||||| || ||||||| ||||||||||||||||||    
T  14044772 taagtttttataaaaaagttgtgtaataattacttgatcaaaagta 14044727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 2835701 - 2835650
Alignment:
Q  42 aaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaa 93  Q
    ||||||||| ||||| |||||||| |||||||||| ||| ||||||||||||    
T  2835701 aaaaaggtaatgtaaatattactttatcaaaagtaaaaatttacatttttaa 2835650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 14863346 - 14863401
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    ||||||| |||||||||||||| ||||  || ||||||||||||||||| ||||||    
T  14863346 accaaaaaaagtaagtttttattaaaaattaatgtaattattacttgataaaaagt 14863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 3600119 - 3600208
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||| ||  || ||||||||||||| || |||||||||||||| || |||| |  ||||||| ||||| ||||||||| |||||||    
T  3600119 caaccaaaataaaaaactttttataaaaag-taatgtaattattacttaattaaaattcaaaacttatattttcaagacaaatattttatt 3600208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 14152576 - 14152487
Alignment:
Q  19 aaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||||| ||||| |||||||| | ||||||||||||||| || |||| | |||||||  | |||||||| ||||||| ||||    
T  14152576 aaccaaaacaagtaacttttttataaaaag-tggtgtaattattacttcataaaaaatctaaacttttaattttaagataaattttctatt 14152487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 11815924 - 11816009
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||||||||| ||||    ||||||| ||||||| ||||||||||  | |||| ||||| |||||||| ||| ||||    
T  11815924 aaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatt 11816009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 34236184 - 34236278
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttata-aaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||||||||| ||||| || ||||  |||||||||||| |||| ||||||||| |||||||| ||||| | |||||||||||||||    
T  34236184 taaacaaccaaaacaagtaattttttttataaaaaatagtgtaattatcacttaatcaaaagt-taaacttatattttcaggacaaattttttatt 34236278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 16831205 - 16831116
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||| ||| ||||||||||||| |||| |||||||||||| |||||||||  ||| ||| |||||||| ||||||||| ||||    
T  16831205 caaccaaaacaaataactttttataaaaag-tagtataattattacttaatcaaaagtcaaaatttatatttttaaaacaaattttatatt 16831116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 55090789 - 55090874
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 104  Q
    |||| ||||||||||| ||||||||||||| | |||||||||| |||| |||||||||  ||||||| ||||| |||||||||||||    
T  55090789 caactaaaacaagtaactttttataaaaagtt-gtgtaattataacttaatcaaaagtcaaaacttatattttcaagacaaattttt 55090874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 48202497 - 48202558
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaactt 83  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||||||| | ||||||    
T  48202497 caaaacaggtaagtttttataagaaggtagtgtaattattacttcatcaaaagcaaaaactt 48202558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 20775083 - 20775170
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||||||||||| |||| ||  |||||| |||| |||||||||| ||  | |||| |||| ||||||||||||||||||    
T  20775083 ccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaattttttatt 20775170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 51100136 - 51100041
Alignment:
Q  14 taaacaaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||| |||||||||||| ||||| || |||| |||||||||||||||||| |||||||||  ||||||| ||||| || | ||||||| ||||    
T  51100136 taaacaatcaaaacaagtaacttttttattaaaaagtagtgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttctatt 51100041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 53142789 - 53142879
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| |||||| ||| ||||||||||||  |  |||||||||||||| |||||||||  ||||||| ||||| | |||||||||||||||    
T  53142789 caaccgaaacaaataactttttataaaaaaatgatgtaattattacttaatcaaaagttaaaacttatattttcatgacaaattttttatt 53142879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 2565510 - 2565458
Alignment:
Q  24 aaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||||||||||||| ||| || ||||||| ||||||||||||||||||    
T  2565510 aaacaagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagta 2565458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 44740957 - 44740877
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaatt-attacttgatcaaaagtataaacttacatttttaa 93  Q
    ||||||||||||| |||||| ||||||||||||  || | ||||| ||||||| ||||||| || ||||||||||||||||    
T  44740957 taaacaaccaaaataagtaaatttttataaaaaaataatttaattaattacttcatcaaaattaaaaacttacatttttaa 44740877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 5645747 - 5645662
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacattttt-aagacaaattttttatt 108  Q
    ||||||| ||| ||||||||||||| |||||||||||||| || |||||||||  |||||||  ||||| |||||||||||| ||||    
T  5645747 aaaacaaataactttttataaaaag-tagtgtaattattatttaatcaaaagtcaaaacttaattttttcaagacaaattttctatt 5645662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 12094962 - 12095024
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||| |||||| |||||||||||||| |||| || ||||||| ||||||| ||||||||||    
T  12094962 taaacatccaaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagta 12095024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 50101389 - 50101295
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||| |||||||| ||| ||||||||||||  |  | |||||| || || ||||||| |  ||||||| |||||||||||||||||||||||    
T  50101389 taaacaatcaaaacaaataattttttataaaaaaatgatataattaatatttaatcaaaaatcaaaacttatatttttaagacaaattttttatt 50101295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 2824916 - 2824863
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||||||||    
T  2824916 aaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagta 2824863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 19480550 - 19480603
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||||||||||||| |||| || ||||||| ||||||| ||||||||||    
T  19480550 aaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagta 19480603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 32325053 - 32325121
Alignment:
Q  38 ttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 107  Q
    |||||||||| | ||||||||||||||| |||||||||  ||| ||| ||||| ||||||||||||||||    
T  32325053 ttataaaaag-tggtgtaattattacttaatcaaaagtcaaaaattatattttcaagacaaattttttat 32325121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 19248898 - 19248981
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaatttt 103  Q
    ||||||||||| ||| |||||||||||||  | |||||| ||||||| || |||| |  ||||||| ||||||||||||||||||    
T  19248898 aaccaaaacaactaattttttataaaaagtga-tgtaatcattacttaattaaaaatcaaaacttatatttttaagacaaatttt 19248981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 41142395 - 41142307
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattca 110  Q
    |||||||||||| |||| | ||||| ||| ||||||||||| || ||||||||||  | ||||  |||| |||||||| ||||||||||    
T  41142395 caaaacaagtaaattttcacaaaaaagtaatgtaattattatttaatcaaaagtaagaccttattttttcaagacaaaatttttattca 41142307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 4860137 - 4860215
Alignment:
Q  29 agtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| |||||||||||| | | |||||||||||||| |||||||||  ||||||| ||||| || ||||||||| ||||    
T  4860137 agtaattttttataaaaaagga-tgtaattattacttaatcaaaagtcaaaacttatattttcaaaacaaattttctatt 4860215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 9119249 - 9119339
Alignment:
Q  18 caaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||||| ||||| || ||||| |||||||||| |||||| |||||||||  ||||||| ||||| |  ||||||||| ||||    
T  9119249 caaccaaaacaagtaatttttttattaaaag-tagtgtaattgttacttaatcaaaagtcaaaacttatattttcaccacaaattttctatt 9119339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 31647731 - 31647786
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    ||||||| || ||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  31647731 accaaaagaaataagtttttattaaaaagtaatgtaattattacttgataaaaagt 31647786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 27284076 - 27284138
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||| |||||| || |||||||||||||||| || ||| ||| |||| |||||||||||||    
T  27284076 taaacatccaaaataaataagtttttataaaaaagttgtgcaatcattatttgatcaaaagta 27284138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 14347209 - 14347141
Alignment:
Q  35 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 104  Q
    ||||||||||||  |||| |||||||||||| ||||||| |  ||||||| |||||||||| ||||||||    
T  14347209 tttttataaaaaa-tagtataattattacttaatcaaaaatcaaaacttatatttttaagataaattttt 14347141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 108
Target Start/End: Complemental strand, 45921411 - 45921354
Alignment:
Q  51 gtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||||| ||||| |||  ||||||| ||||| |||||||||||| ||||    
T  45921411 gtgtaattattacttaatcaatagtcaaaacttatattttcaagacaaattttctatt 45921354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 18131200 - 18131289
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||  |||  ||||||| ||||| |||||||||||| ||||    
T  18131200 caaccaaaacaagtaactttttattaaaag-tagtgtaattattacttaatcagtagtcaaaacttatattttcaagacaaattttctatt 18131289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 108
Target Start/End: Original strand, 3137411 - 3137498
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||| ||||||| ||| |||| || ||||||| ||||||||||||||||||  | |||||||||| |||||||| ||| ||||    
T  3137411 ccaaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatt 3137498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 30924273 - 30924208
Alignment:
Q  15 aaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaac 81  Q
    |||||||||||| |||||| ||||||||||||  ||||||||||||||||| |||||||||| ||||    
T  30924273 aaacaaccaaaataagtaaatttttataaaaaa-tagtgtaattattacttaatcaaaagtaaaaac 30924208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 108
Target Start/End: Original strand, 40607324 - 40607396
Alignment:
Q  35 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||| ||||| ||||||||||||||||| |||||||||  ||||||| |||||||||| ||||||| ||||    
T  40607324 tttttattaaaag-tagtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatt 40607396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 4989715 - 4989793
Alignment:
Q  29 agtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| ||||||||||||  || ||||||| |||||||||||||| |  ||||||| ||||| |||||||||||||||||    
T  4989715 agtaactttttataaaaaatta-tgtaattgttacttgatcaaaaatcaaaacttatattttcaagacaaattttttatt 4989793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 32881117 - 32881211
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| |||||| |||||||||||||  |||| || ||||||| || ||||||| |||| ||  | |||| |||||||||||||| ||||||||    
T  32881117 taaacatccaaaataagtaagtttttaataaaatgttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttatt 32881211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 34678307 - 34678222
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||| || |||| |||||||  || |||||||||||||||||||||||||  |  ||||||||| |||||||||||| ||||    
T  34678307 caaaacaagcaacttttaataaaaaatta-tgtaattattacttgatcaaaagtaacattttacattttcaagacaaattttctatt 34678222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 44655343 - 44655286
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaa 71  Q
    ||||||||||||| || ||||||||||  |||| ||||||||||||||||||| ||||    
T  44655343 taaacaaccaaaataaataagtttttaataaaaagtagtgtaattattacttggtcaa 44655286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 108
Target Start/End: Original strand, 33621408 - 33621464
Alignment:
Q  52 tgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| |||||||||||||||||| ||  ||| |||||||||||||| ||||||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatt 33621464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 18200783 - 18200696
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| ||||||| |||||| ||||  | ||||||| ||||||| ||||||||||  |  ||| |||||||||||||| ||||||||    
T  18200783 ccaaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatt 18200696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 43917598 - 43917653
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||||||| ||||||||||||  | |||||||||||| ||||| |||||||    
T  43917598 ccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagta 43917653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 6270249 - 6270199
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    |||||||||||||||| ||||||| || ||||||| ||||||| |||||||    
T  6270249 aaaacaagtaagttttcataaaaaagttgtgtaatcattactttatcaaaa 6270199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 20821908 - 20821978
Alignment:
Q  28 aagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaa 98  Q
    |||||||||||||| |||| ||| |||||||||||||| || ||||||   || ||| |||||||||||||    
T  20821908 aagtaagtttttattaaaaagtaatgtaattattacttaataaaaagtgacaatttatatttttaagacaa 20821978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 10451944 - 10451997
Alignment:
Q  55 aattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||| |||||||||  ||||||| |||||||| ||||| ||||||||    
T  10451944 aattattacttaatcaaaagtcaaaacttatatttttaatacaaaatttttatt 10451997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 10008201 - 10008259
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||    
T  10008201 caaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagta 10008259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 2911567 - 2911491
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    ||||||| |||||||||| ||||| ||||| |||| |||||||||||||| |||  | |||||||||| ||||||||    
T  2911567 aaaacaaataagtttttaaaaaaaagtagtataatcattacttgatcaaatgtaacatcttacattttcaagacaaa 2911491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 9213135 - 9213059
Alignment:
Q  29 agtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| |  |||| || ||||| |||||||||||||||||    
T  9213135 agtaactttttataaaaag-tagtgtaattattacttgatcaaaaat-caaacata-attttcaagacaaattttttatt 9213059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 2613448 - 2613367
Alignment:
Q  29 agtaagttttta--taaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||  |||||| ||  || ||||||||||||||||||||||  |||||| |||||||||||||| ||| ||||    
T  2613448 agtaagtttttacataaaaatgtgatgaaattattacttgatcaaaagtagcaacttatatttttaagacaaaatttctatt 2613367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 5611238 - 5611144
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| ||||||||||||||||||||| || | || || ||||||||| ||||| |||||||  | |||| |||| ||||||||| ||| ||||    
T  5611238 taaacatccaaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttctatt 5611144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 18493255 - 18493309
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||| |||||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  18493255 caaatcaagtaagtttttataaaaaagttttgtaataattacttgatcaaaagta 18493309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 27082315 - 27082377
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||||||||||||||| |||| || |||| || ||||||| |||| |||||||||||||    
T  27082315 taaacaaccaaaacaagtaaattttcatgaaaaagttgtgtaatgattatttgatcaaaagta 27082377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 108
Target Start/End: Complemental strand, 28048828 - 28048756
Alignment:
Q  35 tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||||| | ||||||||||||||| || ||||||  ||||||| |||||||| ||||||||| ||||    
T  28048828 tttttataaaaag-tggtgtaattattacttaattaaaagtcaaaacttatatttttaaaacaaattttctatt 28048756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 32800212 - 32800303
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaagg-tagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||  ||||| ||||||||||||   | |||||||||||| || ||||||| |  ||||||| |||||||||||||||||| ||||    
T  32800212 caaccaaaagtagtaattttttataaaaaaaatggtgtaattattatttaatcaaaaatcaaaacttatatttttaagacaaattttctatt 32800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 12677828 - 12677882
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 72  Q
    |||| ||||||||||||||||||  |||| |||||||||| |||||||| |||||    
T  12677828 caactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaa 12677882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 19659723 - 19659665
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 72  Q
    |||||| | |||| ||||||||||||||||||| || ||||||| |||| |||||||||    
T  19659723 taaacatctaaaataagtaagtttttataaaaaagttgtgtaatcattagttgatcaaa 19659665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 20208113 - 20208028
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||  ||||||| ||||| || |||||||||||||| |||||||||  | ||||| ||||| || ||||||||| ||||    
T  20208113 caaaacaagtagctttttattaaaag-taatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatt 20208028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 22102136 - 22102051
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||  ||||||| ||||| || |||||||||||||| |||||||||  | ||||| ||||| || ||||||||| ||||    
T  22102136 caaaacaagtagctttttattaaaag-taatgtaattattacttaatcaaaagtcaatacttatattttcaaaacaaattttatatt 22102051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 117
Target Start/End: Complemental strand, 47445459 - 47445362
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttattcaaggattc 117  Q
    |||| |||| |||||||||||||||||  |||| |||||||||||| |||||||||| ||||||| ||||| ||  |||| ||| |||| ||||||||    
T  47445459 accagaacatgtaagtttttataaaaaaatagtttaattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttctatttaaggattc 47445362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 8656302 - 8656393
Alignment:
Q  18 caaccaaaacaagtaagtttt-tataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||| | |||| |||||||| || || |||||||||||| |||||||||  |||||||  ||||||||||||||||| ||||    
T  8656302 caaccaaaacaagtgacttttttataaaaaagtggtataattattacttaatcaaaagttaaaacttatttttttaagacaaattttctatt 8656393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 47537434 - 47537519
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttt 104  Q
    |||| |||||| |||| ||||||||||||| | ||||||||||||||| ||||||| |  ||||||| ||||| |||||||||||||    
T  47537434 caactaaaacaggtaactttttataaaaagtt-gtgtaattattacttaatcaaaaatcaaaacttatattttcaagacaaattttt 47537519  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 37928304 - 37928363
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    |||||| |||||| ||||||||||||||||||| || ||||||| ||||||| |||||||    
T  37928304 taaacatccaaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaa 37928363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 16979953 - 16980031
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    ||||||||||||| ||||||| |||| || |||| ||||||||| |||||||||||  | |||| ||||| ||||||||    
T  16979953 ccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaa 16980031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 41760431 - 41760365
Alignment:
Q  31 taagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagaca 97  Q
    |||| |||||| |||| || ||||||| |||||||||| |||| || ||||||||||||||||||||    
T  41760431 taagattttattaaaaagttgtgtaataattacttgataaaaaataaaaacttacatttttaagaca 41760365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 8896698 - 8896613
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||||||| || ||||  | ||||||| ||||| ||||||||||||  | |||| |||||||||||||| ||| ||||    
T  8896698 aaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatt 8896613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 24937841 - 24937929
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||| |||||| ||||||||||||| | ||||||||||||||| || ||||||  |||  || |||||||| ||||||||| ||||    
T  24937841 aaccaaaataagtaactttttataaaaag-tggtgtaattattacttaattaaaagtcaaaatctatatttttaaaacaaattttctatt 24937929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 34834703 - 34834773
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttt 90  Q
    |||||||||||   ||||||||||||| |||||||  ||||||||||| ||||||| || |||||||||||||    
T  34834703 caaccaaaacattcaagtttttataaagaggtagt--aattattacttcatcaaaaataaaaacttacatttt 34834773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 23142762 - 23142702
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttat-aaaaaggtagtgtaattattacttgatcaaaa 73  Q
    |||||| |||||| |||||||||||||| ||||| || ||||||| |||||||||||||||    
T  23142762 taaacatccaaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaa 23142702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Complemental strand, 34993224 - 34993152
Alignment:
Q  27 caagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||||||||| || |||| || |||||||||||| || ||||||||||  | |||| ||||||||||||||    
T  34993224 caagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaa 34993152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 45907134 - 45907082
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    |||| |||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  45907134 aaaagaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagt 45907082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 39786557 - 39786467
Alignment:
Q  18 caaccaaaacaagtaagttttt-ataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||| ||| ||||| || ||||| |||||||||||||| || |||||||||  ||||||| ||||| ||||||| |||| ||||    
T  39786557 caaccaaaacaaataacttttttattaaaag-tagtgtaattattatttaatcaaaagttaaaacttatattttcaagacaagttttctatt 39786467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 39386917 - 39387003
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||| ||||||   ||| || || | ||||||||||||||||||||  ||| ||| ||||||| || ||||||||||||    
T  39386917 caaaacaagtaattttttaatgaaaagttgtatgattattacttgatcaaaagttaaaatttatatttttaggataaattttttatt 39387003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 23317894 - 23317845
Alignment:
Q  27 caagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||||||| ||||||| || ||||||| || |||||||||||||||    
T  23317894 caagtaagttttcataaaaaagtggtgtaatcataacttgatcaaaagta 23317845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 25780245 - 25780298
Alignment:
Q  55 aattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||||||| || ||||||  ||||||| |||||| ||||||||||||||||    
T  25780245 aattattacttaattaaaagtcaaaacttatatttttcagacaaattttttatt 25780298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 33988545 - 33988492
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    ||||||| ||| |||||||||||||| ||||||| |||||||| || |||||||    
T  33988545 aaaacaactaaatttttataaaaaggaagtgtaaatattactttataaaaagta 33988492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 46300678 - 46300762
Alignment:
Q  15 aaacaaccaaaacaagtaag-tttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    ||||||| |||||||||||| |||||||||||||  | |||||||||||| |||| ||||||  |||| || ||||| ||||||||    
T  46300678 aaacaactaaaacaagtaaggtttttataaaaagtga-tgtaattattacatgataaaaagtcaaaacatatattttcaagacaaa 46300762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 29032425 - 29032501
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaa 99  Q
    |||||||| |||||||||| |||| || ||||||| ||||||||||||||||||  | |||| ||||||||||||||    
T  29032425 aaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaa 29032501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 48338824 - 48338876
Alignment:
Q  21 ccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    |||||||||||||||||||||||||| || ||||||| ||||||| |||||||    
T  48338824 ccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaa 48338876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 4490785 - 4490862
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacattttta 92  Q
    ||||||| |||||||| |||||||| || ||||| |||||||||||||| || |||||||||| ||| ||| |||||||    
T  4490785 taaacaatcaaaacaaataagtttt-attaaaagatagtgtaattattattttatcaaaagtaaaaatttatattttta 4490862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 34228357 - 34228273
Alignment:
Q  23 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||| ||||| |||||||||||||  | || |||||||| || |||||||||  ||| ||| |||||||||||||||||||||||    
T  34228357 aaaacgagtaactttttataaaaagtga-tgaaattattatttaatcaaaagtcaaaatttatatttttaagacaaattttttatt 34228273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 54801431 - 54801346
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttat 107  Q
    ||||| |||||||||||||| ||||  | ||||||||||||||| | ||||||||  | |||| ||||| |||| |||||||||||    
T  54801431 caaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaagataaattttttat 54801346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 15671221 - 15671165
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    |||||||  |||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  15671221 aaccaaatgaagtaagtttttattaaaaagtaatgtaattattacttgataaaaagt 15671165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 41287969 - 41287898
Alignment:
Q  36 ttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||||||||  ||||||||||||||||| ||||||| |  ||||||| |||||||| ||||||||| ||||    
T  41287969 ttttataaaaaa-tagtgtaattattacttaatcaaaaatcaaaacttatatttttaaaacaaattttctatt 41287898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 2379705 - 2379631
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagaca 97  Q
    ||||| |||||||||||||| |||| ||||||||||| |||||||||  |||| |  |||||||||||| ||||||    
T  2379705 caaaataagtaagtttttattaaaaagtagtgtaattcttacttgat-taaaggaacaacttacattttcaagaca 2379631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 35322019 - 35322074
Alignment:
Q  20 accaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagt 75  Q
    ||||||| |||||||||||||| |||| ||| |||||||||||||| || ||||||    
T  35322019 accaaaagaagtaagtttttattaaaaagtaatgtaattattacttaataaaaagt 35322074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 42788438 - 42788343
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaagg-tagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    ||||||| ||||||  |||||||||||||||||   || ||||||||||| || |||||||||| ||| ||||||||| || ||||| || |||||    
T  42788438 taaacaatcaaaactggtaagtttttataaaaaaaataatgtaattattattttatcaaaagtaaaaatttacattttcaatacaaaattgttatt 42788343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 4020107 - 4020161
Alignment:
Q  19 aaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaa 73  Q
    ||||||||||||||||||||||| ||||  | ||||||| ||||||| |||||||    
T  4020107 aaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaa 4020161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 37043095 - 37043037
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaa 72  Q
    |||||||| ||| ||||||||||||||  |||| ||||| |||| ||||||||||||||    
T  37043095 taaacaactaaatcaagtaagtttttaataaaaagtagtataatcattacttgatcaaa 37043037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 55446737 - 55446830
Alignment:
Q  14 taaacaaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaattttttatt 108  Q
    |||||| | |||| ||||||||||||||||||| || ||||||| ||||||| || |||||||  | |||| ||||  |||||||| ||||||||    
T  55446737 taaacatctaaaagaagtaagtttttataaaaa-gttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatt 55446830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31069665 - 31069612
Alignment:
Q  18 caaccaaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaa 71  Q
    ||||||||| ||||| |||||||  |||| ||||||||||||||||||| ||||    
T  31069665 caaccaaaataagtacgtttttaataaaaagtagtgtaattattacttggtcaa 31069612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 30088 - 30034
Alignment:
Q  22 caaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagta 76  Q
    |||||||||||||||||||| ||||| | |||||||||||| || || |||||||    
T  30088 caaaacaagtaagtttttatgaaaagtttgtgtaattattatttaattaaaagta 30034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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