View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3356_low_10 (Length: 449)
Name: NF3356_low_10
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 11849919 - 11849516
Alignment:
| Q |
18 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatatactctatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11849919 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatatactct--gt |
11849822 |
T |
|
| Q |
118 |
gtttcatgtaatataaaatgtgttttggtgagtttatttgtttataatcttttatggatcatatatatatgtaccccggtatgtaagttttcattatttc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849821 |
gtttcatgtaatataaaatgtgttttggtgagtttatttgtttataatcttttatggatcatatatatatgtaccccggtatgtaagttttcattatttc |
11849722 |
T |
|
| Q |
218 |
cattaatatatataatttttctttcaactttctatattgattttacttataaaaatcagaattagctggtaccacatttggagtttgagttgtttcactt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849721 |
cattaatatatataatttttctttcaactttctatattgattttacttataaaaatcagaattagctggtaccacatttggagtttgagttgtttcactt |
11849622 |
T |
|
| Q |
318 |
ttgcttggatgtgtgaaacaacaatcacagtcttgattcatgacttccaagttttaaccatcctcaagttctatttgtttttgtttctgtcctgagcatg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11849621 |
ttgcttggatgtgtgaaacaacaatcacagtcttgattcatgacttccaagttttaaccatcctcaagttctatttgtttttgtttctgtcctgagcatg |
11849522 |
T |
|
| Q |
418 |
tcttag |
423 |
Q |
| |
|
|||||| |
|
|
| T |
11849521 |
tcttag |
11849516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 11851776 - 11851863
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
106 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
11851776 |
gttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
11851863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 11854490 - 11854579
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
108 |
Q |
| |
|
|||||||| || || |||||||||||||| || ||||||| | || ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
11854490 |
gttgatgcttccaaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgatat |
11854579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 29073249 - 29073654
Alignment:
| Q |
18 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatatactctatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29073249 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtccgatgcttgatatactctatgt |
29073348 |
T |
|
| Q |
118 |
gtttcatgtaatataaaatgtgttttggtgagtttatttgtttataatcttttatggatcatatatatatgtaccccggtatgtaagttttcatta---- |
213 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
29073349 |
gtttcacgtaatataaattgtattttggtgagtttatttgtttataatcttttatggatcatatatatatgta--ccggtatataagttttcattattat |
29073446 |
T |
|
| Q |
214 |
tttccattaatatatataatttttctttcaactttctatattgattttacttataaaaatcagaattagctggtaccacatttggagtttgagttgtttc |
313 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29073447 |
tttccattaatatttataatttttctttcaacttgcaata-tgattttacttataaaaatcagcattagctgctaccacatttggagtttgagttgtttc |
29073545 |
T |
|
| Q |
314 |
acttttgcttggatgtgtgaaac--aacaatcacagtcttgattcatgacttccaagttttaaccatcctcaagttctatttgtttttgtttctgtcctg |
411 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
|
|
| T |
29073546 |
actttagcttggatgtgtgaaacataacaatcacagtcttaattc---acttccaagttttaaccattcttaagttctatttgtatttgtttctgtcctg |
29073642 |
T |
|
| Q |
412 |
agcatgtcttag |
423 |
Q |
| |
|
||| |||||||| |
|
|
| T |
29073643 |
agcttgtcttag |
29073654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 29102212 - 29102375
Alignment:
| Q |
18 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatatactctatgt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29102212 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatatactctatgt |
29102311 |
T |
|
| Q |
118 |
gtttcatgtaatataaaatgtgttttggtgagtttatttgtttataatcttttatggatcatat |
181 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29102312 |
gtttcatgtaatataaattgtattttggtgagtttatttgtttataatcttttatgtatcatat |
29102375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 29116357 - 29116447
Alignment:
| Q |
18 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29116357 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
29116447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 3619175 - 3619265
Alignment:
| Q |
18 |
agttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3619175 |
agttgatgcctctaaagctgtgtggaaagccttggatgttcctcatgatcaatggggtggattggatattacatggtctgatgcttgatat |
3619265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 3617475 - 3617388
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
106 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||| |||||||||| |
|
|
| T |
3617475 |
gttgatgcttctaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggcctagatattacatggtcagatgcttgat |
3617388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 29058168 - 29058081
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
106 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
29058168 |
gttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
29058081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 29071396 - 29071309
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
106 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| |
|
|
| T |
29071396 |
gttgatgcttccaaggctgtgtggaaagccttgggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgat |
29071309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 28956978 - 28957068
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatata |
109 |
Q |
| |
|
|||||||| || || ||||||||| |||| || ||||||||||| |||||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
28956978 |
gttgatgcttccaaggctgtgtgggaagctttaggtgtgcctcaagatcaatggggtggccttgacattacatggtcagatgcttgatata |
28957068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 29078129 - 29078043
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttga |
105 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||| | |||||||||||||| ||||||||| |
|
|
| T |
29078129 |
gttgatgcttccaaagctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggccttgacattacatggtcagatgcttga |
29078043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 29110880 - 29110791
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
108 |
Q |
| |
|
|||||||| || ||||||||||||||||| || ||||||||| | || ||||||||||| | || ||||||||||| |||||||||||| |
|
|
| T |
29110880 |
gttgatgcttccaaagctgtgtggaaagctttaggtgtgcctaaagaacaatggggtggtcttgatattacatggtcagatgcttgatat |
29110791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 29066937 - 29067009
Alignment:
| Q |
34 |
gctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgat |
106 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
29066937 |
gctgtgtggaaagccttaggtgtcccaaggaatcaatggggtgggttggatattacatggtctgatgcttgat |
29067009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 112 - 185
Target Start/End: Original strand, 3619283 - 3619356
Alignment:
| Q |
112 |
ctatgtgtttcatgtaatataaaatgtgttttggtgagtttatttgtttataatcttttatggatcatatatat |
185 |
Q |
| |
|
|||| |||||||||||||||| ||||||||| ||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
3619283 |
ctatttgtttcatgtaatatacttattgttttggtaagtttatttgtatatcatcttttatgtatcatatatat |
3619356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 29068934 - 29068845
Alignment:
| Q |
19 |
gttgatgcctctaaagctgtgtggaaagccttgggtgtgcctcatgatcaatggggtggattggacattacatggtctgatgcttgatat |
108 |
Q |
| |
|
|||||||| || || |||||||||||||| || ||||||| | || ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
29068934 |
gttgatgcttccaaggctgtgtggaaagctttaaatgtgcctaaagagcaatggggtggccttgacattacatggtcagatgcttgatat |
29068845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University