View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_11 (Length: 444)

Name: NF3356_low_11
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_11
NF3356_low_11
[»] chr1 (4 HSPs)
chr1 (1-426)||(44742530-44742955)
chr1 (139-192)||(4806792-4806845)
chr1 (170-211)||(41916587-41916628)
chr1 (165-193)||(41142709-41142737)
[»] chr7 (3 HSPs)
chr7 (145-194)||(35836028-35836077)
chr7 (143-208)||(5526720-5526785)
chr7 (165-193)||(3948064-3948092)
[»] chr4 (5 HSPs)
chr4 (169-211)||(29346335-29346377)
chr4 (143-208)||(16432958-16433023)
chr4 (165-193)||(24063231-24063259)
chr4 (165-193)||(24540853-24540881)
chr4 (165-193)||(49233818-49233846)
[»] chr3 (2 HSPs)
chr3 (135-208)||(38387967-38388040)
chr3 (165-193)||(31138427-31138455)
[»] chr5 (1 HSPs)
chr5 (153-205)||(20718966-20719018)
[»] scaffold0038 (1 HSPs)
scaffold0038 (165-202)||(31945-31982)
[»] chr8 (1 HSPs)
chr8 (165-210)||(26991780-26991825)
[»] chr6 (1 HSPs)
chr6 (165-202)||(28231448-28231485)
[»] chr2 (2 HSPs)
chr2 (145-193)||(25603914-25603962)
chr2 (141-193)||(45032703-45032755)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 44742530 - 44742955
Alignment:
Q  1 gataatttggagttcgactctgaagtaaatataattgactaaaaatatttcatctaagaattaaactcgagttgtttcgaatgatttatactttggtcga 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||    
T  44742530 gataatttggagttcgactgtgaagtaaatataattgactaaaaatatttcatttaagaattaaactcgagttgtttcgaatgatctataatttggtcga 44742629  T
Q  101 gtttattaatcacgtaaactcaannnnnnnggtagtgatcgaggtttgagcctcaaatcttatttatattatgcattgtctctatcaactgagccgagct 200  Q
    ||||||||||||| | |||||||       ||| ||||| ||||||||||||||||| ||| ||||||||||| |||||||||| ||||| |||||| ||    
T  44742630 gtttattaatcacttgaactcaatttttttggtggtgattgaggtttgagcctcaaaccttgtttatattatgtattgtctctaccaactcagccgaact 44742729  T
Q  201 catgaggataatcatttgaactcaattgttaatggaaaaacgtttctttaattaattaaaattgtttctattaaaatgggagcacgataattgcattaat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742730 catgaggataatcatttgaactcaattgttaatggaaaaacgtttctttaattaattaaaattgtttctattaaaatgggagcacgataattgcattaat 44742829  T
Q  301 aatgaaaataaaaaagtactggtataattgaacaaaggccccactgtaatttcctcaacgaatgagaaagaaaaacattatccgatctattattgctatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44742830 aatgaaaataaaaaagtactggtataattgaacaaaggccccactgtaatttcctcaacgaatgagaaagaaaaacattatccgatctattattgctatg 44742929  T
Q  401 ggaaggacaaggtatcgggcatttat 426  Q
    |||||||||||||| |||||||||||    
T  44742930 ggaaggacaaggtaccgggcatttat 44742955  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 4806792 - 4806845
Alignment:
Q  139 tcgaggtttgagcctcaaatcttatttatattatgcattgtctctatcaactga 192  Q
    ||||||||||| ||||||| ||||  |||||||| ||||||||||| |||||||    
T  4806792 tcgaggtttgaacctcaaaccttacatatattatacattgtctctaccaactga 4806845  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 41916587 - 41916628
Alignment:
Q  170 tatgcattgtctctatcaactgagccgagctcatgaggataa 211  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
T  41916587 tatgcattgtccctatcaactgagctaagctcatgaggataa 41916628  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 41142709 - 41142737
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  41142709 tatattatgcattgtctctatcaactgag 41142737  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 35836077 - 35836028
Alignment:
Q  145 tttgagcctcaaatcttatttatattatgcattgtctctatcaactgagc 194  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  35836077 tttgaacctcaaatcttatatatactatgcattgtctctatcaactgagc 35836028  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 5526785 - 5526720
Alignment:
Q  143 ggtttgagcctcaaatcttatttatattatgcattgtctctatcaactgagccgagctcatgagga 208  Q
    ||||||| || |||||||||| ||||||||||||||||  || |||||||||  |||||| |||||    
T  5526785 ggtttgaaccccaaatcttatatatattatgcattgtccataccaactgagctaagctcacgagga 5526720  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 3948092 - 3948064
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  3948092 tatattatgcattgtctctatcaactgag 3948064  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 29346335 - 29346377
Alignment:
Q  169 ttatgcattgtctctatcaactgagccgagctcatgaggataa 211  Q
    ||||||||||||||||||||||||||  |||||||||||||||    
T  29346335 ttatgcattgtctctatcaactgagctaagctcatgaggataa 29346377  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 16432958 - 16433023
Alignment:
Q  143 ggtttgagcctcaaatcttatttatattatgcattgtctctatcaactgagccgagctcatgagga 208  Q
    ||||||| ||||| ||||||| ||||||||||||||||| | ||| ||||||  |||||| |||||    
T  16432958 ggtttgaacctcagatcttatatatattatgcattgtctatgtcagctgagctaagctcacgagga 16433023  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 24063231 - 24063259
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  24063231 tatattatgcattgtctctatcaactgag 24063259  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 24540881 - 24540853
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  24540881 tatattatgcattgtctctatcaactgag 24540853  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 49233818 - 49233846
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  49233818 tatattatgcattgtctctatcaactgag 49233846  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 38388040 - 38387967
Alignment:
Q  135 gtgatcgaggtttgagcctcaaatcttatttatattatgcattgtctctatcaactgagccgagctcatgagga 208  Q
    |||| |||| ||||||||||| |||||   |||||||||||||||| |||||||||||||  |||||| |||||    
T  38388040 gtgaccgagatttgagcctcagatcttgcatatattatgcattgtcactatcaactgagctaagctcacgagga 38387967  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 193
Target Start/End: Complemental strand, 31138455 - 31138427
Alignment:
Q  165 tatattatgcattgtctctatcaactgag 193  Q
    |||||||||||||||||||||||||||||    
T  31138455 tatattatgcattgtctctatcaactgag 31138427  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 20718966 - 20719018
Alignment:
Q  153 tcaaatcttatttatattatgcattgtctctatcaactgagccgagctcatga 205  Q
    ||||||||||| |||||||||||||||||  |||||||||||  |||||||||    
T  20718966 tcaaatcttatgtatattatgcattgtctaaatcaactgagctaagctcatga 20719018  T

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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 31945 - 31982
Alignment:
Q  165 tatattatgcattgtctctatcaactgagccgagctca 202  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  31945 tatattatgcattgtccctatcaactgagccaagctca 31982  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 210
Target Start/End: Original strand, 26991780 - 26991825
Alignment:
Q  165 tatattatgcattgtctctatcaactgagccgagctcatgaggata 210  Q
    ||||||||||||||||  ||||||||||||| | ||||||||||||    
T  26991780 tatattatgcattgtccatatcaactgagccaaactcatgaggata 26991825  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 28231448 - 28231485
Alignment:
Q  165 tatattatgcattgtctctatcaactgagccgagctca 202  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  28231448 tatattatgcattgtccctatcaactgagccaagctca 28231485  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 25603914 - 25603962
Alignment:
Q  145 tttgagcctcaaatcttatttatattatgcattgtctctatcaactgag 193  Q
    ||||| || |||| ||||| |||||||||||||||| ||||||||||||    
T  25603914 tttgaaccccaaaccttatatatattatgcattgtccctatcaactgag 25603962  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 45032755 - 45032703
Alignment:
Q  141 gaggtttgagcctcaaatcttatttatattatgcattgtctctatcaactgag 193  Q
    ||||||||||||||| |||||   |||||||||||||||| ||| ||||||||    
T  45032755 gaggtttgagcctcagatcttgcatatattatgcattgtccctaccaactgag 45032703  T

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