View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_12 (Length: 396)

Name: NF3356_low_12
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_12
NF3356_low_12
[»] chr3 (4 HSPs)
chr3 (144-380)||(1323257-1323493)
chr3 (206-377)||(1337367-1337538)
chr3 (201-377)||(1263162-1263338)
chr3 (105-143)||(1323510-1323548)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 1323493 - 1323257
Alignment:
Q  144 aaaaatcacggaaatgaccgttggtaatcaaattcattttataaatgtatatatatttttgtagagatttgtgccatcagattttggtgtagaagaagac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1323493 aaaaatcacggaaatgaccgttggtaatcaaattcattttataaatgtatatatatttttgtagagatttgtgccatcagattttggtgtagaagaagac 1323394  T
Q  244 cgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagagaaatcgaagcagctggaattccttatacttatgtctctg 343  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1323393 cgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagagaaatcgaagcagctggaatcccttatacttatgtctctg 1323294  T
Q  344 caaattgttttggtgcatactttgtcaatatcttact 380  Q
    |||||||||||||||||||||||||||||||||||||    
T  1323293 caaattgttttggtgcatactttgtcaatatcttact 1323257  T

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Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 206 - 377
Target Start/End: Complemental strand, 1337538 - 1337367
Alignment:
Q  206 agagatttgtgccatcagattttggtgtagaagaagaccgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagaga 305  Q
    |||||||| | |||||||| |||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1337538 agagatttcttccatcagactttggtgtagaagaagacagagtacaccctcttcctccatttcaagcttttcttgataagaaaataaaaattagaagaga 1337439  T
Q  306 aatcgaagcagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatctt 377  Q
    ||| |||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| ||| ||||    
T  1337438 aattgaagcagcaggaatcccttatacttttgtctcagcaaattgttttggtgcatactttgtgaatttctt 1337367  T

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Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 201 - 377
Target Start/End: Original strand, 1263162 - 1263338
Alignment:
Q  201 tttgtagagatttgtgccatcagattttggtgtagaagaagaccgagtgcatcctcttcctccatttcaagcttttcttgataagaaaataaaaattaga 300  Q
    ||||||||||||| | ||||| ||||||||||| ||||||||  ||||  | |||||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1263162 tttgtagagatttcttccatcggattttggtgtggaagaagatagagtaaaacctcttcctccattccaaggtttccttgataagaaaagaaaaattaga 1263261  T
Q  301 agagaaatcgaagcagctggaattccttatacttatgtctctgcaaattgttttggtgcatactttgtcaatatctt 377  Q
    || ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| ||| ||||    
T  1263262 agggaaattgaagcatctgggattccttatacttttgtctctgcaaattgttttggggcatattttgtgaatttctt 1263338  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 1323548 - 1323510
Alignment:
Q  105 aaaatagtacaagtagtatctgatatcattttttctccg 143  Q
    |||||||||| |||||||||||||| |||||||||||||    
T  1323548 aaaatagtactagtagtatctgataccattttttctccg 1323510  T

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