View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_13 (Length: 389)
Name: NF3356_low_13
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 47551251 - 47550891
Alignment:
| Q |
13 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaattttcccagttaaaca |
112 |
Q |
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| T |
47551251 |
aatatatgttccaaacatgcatctgaaagaatgagttaccactaacgcctatttgatctgctaccctaattcctaactcatgaagtttcccagttaaaca |
47551152 |
T |
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| Q |
113 |
aattaacaaggggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttt |
208 |
Q |
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| T |
47551151 |
aattaacaaggg-ccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttg |
47551053 |
T |
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| Q |
209 |
tcttcttcagcattgcatcacgacaaaaagaatccagttgatgatcaaagctatccacccgccgcggcagggaatttgttgttcctatcttgttccatcc |
308 |
Q |
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| T |
47551052 |
tcttcttcagcattgcatcaccacaaaaagaatccagttgatgatcaaagctatccac---ccgcggcagggaatttgttgtttctatcttgttcgatcc |
47550956 |
T |
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| Q |
309 |
tgctgcggtgttcttctgcacactttcaactgaagaaataatgcctcccaacccattattgtctc |
373 |
Q |
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| T |
47550955 |
tgctgcggtgttcttctgcacactttcaactgaagaaataatgcctcccaacccattattgtctc |
47550891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 47538484 - 47538259
Alignment:
| Q |
13 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatct--gctaccctaattcctaactcatgaattttcccagttaaa |
110 |
Q |
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| T |
47538484 |
aatatatgttccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaa |
47538385 |
T |
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| Q |
111 |
caaattaacaag---gggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
203 |
Q |
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| T |
47538384 |
cgaattaacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
47538285 |
T |
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| Q |
204 |
acttttcttcttcagcattgcatcac |
229 |
Q |
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| T |
47538284 |
acttgtcttctttagcattgcatcac |
47538259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 47545041 - 47544830
Alignment:
| Q |
13 |
aatatatgtttcaaacatgcatctgaaagaatgagttaccactaacgcctatttgatct--gctaccctaattcctaactcatgaattttcccagttaaa |
110 |
Q |
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| T |
47545041 |
aatatatgttccagacatgcttctggaagaatgagttaccactaaggcctatttgatctatgctaccctaattcttatctcataaattttcccagttaaa |
47544942 |
T |
|
| Q |
111 |
caaattaacaag---gggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
203 |
Q |
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| T |
47544941 |
cgaattaacaagaaagggccttaactttcaaataggaaagaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatc |
47544842 |
T |
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| Q |
204 |
acttttcttctt |
215 |
Q |
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|||| ||||||| |
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| T |
47544841 |
acttgtcttctt |
47544830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 47529275 - 47529179
Alignment:
| Q |
124 |
ggccttaactttcaaata----agaaaagtattgtttcagaacaatgtgttcatgaaaacatcatgtaatcaaattgttctatcacttttcttcttc |
216 |
Q |
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| T |
47529275 |
ggccttaactttcaaataggaaagaaaagtattgtctcaaaacaatgtgttcatgaaaacattatgtaatcaaattattctatcacttgtcttcttc |
47529179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 47529129 - 47529049
Alignment:
| Q |
274 |
ggcagggaatttgttgttcctatcttgttccatcctgctgcggtgttcttctgcacactttcaactgaagaaataatgcctccc |
357 |
Q |
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||||||||||||||| |||||||||||||| ||||||| |||| |||||| |||||||| ||||||||||||||| |||| |
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| T |
47529129 |
ggcagggaatttgttcgtcctatcttgttcccacctgctggggtg---ttctgcccactttcagctgaagaaataatgcttccc |
47529049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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