View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_16 (Length: 377)
Name: NF3356_low_16
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 22 - 371
Target Start/End: Original strand, 47466933 - 47467282
Alignment:
| Q |
22 |
ttttttccgtgcgtagcgtcttcatcaaaaactgtcgatgatgagttactgttcaacgaaacccttatgaagtcactcgtcatttcccaaaatgcatcct |
121 |
Q |
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| T |
47466933 |
ttttttccgtgcgtagcgtcttcatcaaaaactgtcgatgatgagttactgttcaacgaaacccttatgaagtcactcgtcatttcccaaaatgcatcct |
47467032 |
T |
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| Q |
122 |
catccacgtcacctccattgctctgcgtagcatcttcatcagaggtagttgatgttgccactgtcgttaagactgaacaggcaaagatcgttacccaaga |
221 |
Q |
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| T |
47467033 |
catccacgtcacctccattgctctgcgtagcatcttcatcagaggtagttgatgttgccgctgtcgttaagactgaacaggcaaaggtctttacccaaga |
47467132 |
T |
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| Q |
222 |
aacagatgaaccctcttcaatcactgtttgtgagatttgtgcggaaacaaaaacgactgatgaaatgttcagaaacctgagatgttatcattcattttgt |
321 |
Q |
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| T |
47467133 |
aacagatgaaccctcttcaatcactgtttgtgagatttgtgcggaaacaaaaacgactgatgaaatgttcagaaacctgagatgttatcattcattttgt |
47467232 |
T |
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| Q |
322 |
tctgaatgtgttgtcaaacaagtggctacaaaaatccaagacaacataac |
371 |
Q |
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| T |
47467233 |
tctgaatgtgttgtcaaacaagtggctacaaaaatccaagacaacataac |
47467282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 248 - 371
Target Start/End: Original strand, 47460492 - 47460616
Alignment:
| Q |
248 |
tttgtgagatttgtgcggaaacaaaaacgactgatgaaatgttcagaaacctgagat-gttatcattcattttgttctgaatgtgttgtcaaacaagtgg |
346 |
Q |
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| T |
47460492 |
tttgcgagatttgtgccgaaacaaaaacggctgatgaaatgtttaggaatcagatattgttaccattcattttgttctgaatgtgttgtcaaacaagtgg |
47460591 |
T |
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| Q |
347 |
ctacaaaaatccaagacaacataac |
371 |
Q |
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| T |
47460592 |
caacaaaaatccaagacaacataac |
47460616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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