View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_17 (Length: 373)
Name: NF3356_low_17
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 37010914 - 37010561
Alignment:
| Q |
1 |
ttaactcagcttcgtcttcttcttccttctcggcgagaccgcatttacatttcgccggtgaacattcaatttccgaacgacttatcccttctattagctg |
100 |
Q |
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| T |
37010914 |
ttaacacagcttcgtcttcttcttccttctcggcgagaccgcatttacatttcgccggtgaacattcaatttccgaacgacttatcccttctattagctg |
37010815 |
T |
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| Q |
101 |
caaccagtaatggccgccggagcaaccaaaaactcgaatgaaaccacacgtgagcacacagaacaagaaatagacgaggaccgaagcttcgaagagctag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37010814 |
caaccagtaatggccgccggagcaaccaaaaactcgaatgaaaccacacgtgagcacacagaacaagaaatagacgaggaccgaagcttcgaagagctag |
37010715 |
T |
|
| Q |
201 |
ggttagacgcacgtctcgttcgcgctttactgaagaaacgaattgagaaacctactccaattcaacacgttgctattccgttgattctcgaaggtaaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37010714 |
ggttagacgcacgtctcgttcgcgctttactgaagaaacgaattgagaaacctactccaattcaacacgttgctattccgttgattctcgaaggtaaaga |
37010615 |
T |
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| Q |
301 |
cgtcgttgctcgcgcaaaaactggttctggaaaaacacttgcttatcttcttcc |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37010614 |
cgtcgttgctcgcgcaaaaactggttctggaaaaacacttgcttatcttcttcc |
37010561 |
T |
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