View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_19 (Length: 339)
Name: NF3356_low_19
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 105 - 331
Target Start/End: Original strand, 37688931 - 37689159
Alignment:
| Q |
105 |
agagcaaaatagagatgagagaagagcaattctccgaaaaggctcaacgaatgatttaatatgggcc-aagtctcaaccaaaccaacccagtaagcccaa |
203 |
Q |
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| T |
37688931 |
agagcaaaaaagagaagagagaagagcaattctccgaaaaggctcaacgaatgatttaatatgggcccaagtctgaaccaaaccaacccagtaagcccaa |
37689030 |
T |
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| Q |
204 |
agacgacccgatataacataaaaccctaattcacagtgatataaagcaaactctgcttccttctctattcttcgtttgcccagccga-tcgatctaaaac |
302 |
Q |
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| T |
37689031 |
agacgacccgatataacataaaaccctaattcacagtcatataaagcagactctgcttccttctcaactcttcgtttgcccagccgagccgatctcaaac |
37689130 |
T |
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| Q |
303 |
caccttgcaacaatggtaaacacgtctct |
331 |
Q |
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| T |
37689131 |
caccttgcaacaatggtaaacacgtctct |
37689159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 37688874 - 37688929
Alignment:
| Q |
19 |
aattagcttacgtatatgtattttcaacataagttaacttacgtagatgtattttt |
74 |
Q |
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| T |
37688874 |
aattagtttacgtatatgtattttcaacataagttaacttacgtaggtgtattttt |
37688929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 37442605 - 37442561
Alignment:
| Q |
34 |
atgtattttcaacataagttaacttacgtagatgtatttttcagc |
78 |
Q |
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| T |
37442605 |
atgtattttcaacatgagttaactcacgtaggtgtatttttcagc |
37442561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 40303134 - 40303087
Alignment:
| Q |
273 |
cttcgtttgcccagccgatc-gatctaaaaccaccttgcaacaatggt |
319 |
Q |
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| T |
40303134 |
cttcgtttgcccagccgagccgatctcaaaccaccttgcaacaatggt |
40303087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 5754387 - 5754346
Alignment:
| Q |
35 |
tgtattttcaacataagttaacttacgtagatgtatttttca |
76 |
Q |
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| T |
5754387 |
tgtattttcaacgtaagttaactcacgtagatgcatttttca |
5754346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 30283634 - 30283705
Alignment:
| Q |
66 |
tgtatttttcagcatggtttaactaacgtaaaacggaaaagagcaaaatagagatgagagaagagcaattctc |
138 |
Q |
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| T |
30283634 |
tgtatttttcagcatgatttaactcacataagacggaaatgagcaaaa-gtaaatgagagaagatcaattctc |
30283705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 138
Target Start/End: Original strand, 8514006 - 8514093
Alignment:
| Q |
50 |
agttaacttacgtagatgtatttttcagcatggtttaactaacgtaaaacggaaaagagcaaaatagagatgagagaagagcaattctc |
138 |
Q |
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| T |
8514006 |
agttaactcacgtaggtgtatttttcaacgtaatttaactcacgtagtacggaaatgagcaaaa-acagatgggagaagagcgattctc |
8514093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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