View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_2 (Length: 608)
Name: NF3356_low_2
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 39092904 - 39093485
Alignment:
| Q |
18 |
aaatacagggcaaaatcaaagtttgtgaagaataattccccttgtagacacataaaacaacagtaaagagacttaaataaaactcttaatagaatacgtg |
117 |
Q |
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| T |
39092904 |
aaatacaggccaaaatcaaagtttgtgaagaataattccccttgtagacacctaaaacaacaataaagagacttaaataaaactcttaatagaatacatg |
39093003 |
T |
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| Q |
118 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaataaaacaacaaaagattctcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39093004 |
ttaaatgcctccaagacaaaccaagaaaaaccgatgggaacttgaagcacacctaagactgagaacctaaagcaacaagaaaacaacaaaagattctcac |
39093103 |
T |
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| Q |
218 |
gaccttaatactttatgcaactctgtgatagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatag |
317 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093104 |
gaccttaatactttatgcaactctg--atagaaacctcatagctacaatattttattatctcagtatcaattgtgcacctacaccagctcctatagatag |
39093201 |
T |
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| Q |
318 |
gaaccaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactata |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39093202 |
gaaccaactatcttagattaatatatattcttataggtgtattctttttctcttggttaataattaataatacacccatggttcccgtgtgaatactata |
39093301 |
T |
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| Q |
418 |
ataattagcctatgcacgtcattatcttaaaaaatattgccattatgataaac---------cgtgtataaaaatgttgagaaaattactcttatgtcat |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39093302 |
ataattagcctatgcacgtcattatcttaaaaaatattgccattatgataaaccgtgtatctcgtgtataaaaatgttgagaaaattactcttatgtcat |
39093401 |
T |
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| Q |
509 |
taaccaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgccgaaggggcctttg |
592 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39093402 |
taaccaaattttaattttcgtgtctcaacaattttgagattcaattatgtatatattgtattagagatgcccaaggggcctttg |
39093485 |
T |
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