View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_22 (Length: 295)
Name: NF3356_low_22
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 3245895 - 3246179
Alignment:
| Q |
1 |
aaaatatcaacaattaattgattatttttgtcaatgagtgatatgattttatgtattctttgaagtgatttgctcaaattttgtgataatttgagattaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3245895 |
aaaatatcaacaattaattgattatttttgtcaatgagtgatatgattttatgtattctttgaagtgatttgctcaaattttgtgataatttgagattaa |
3245994 |
T |
|
| Q |
101 |
ccaattaatttgatacacaacaaattagtgataatgaagcataccaaactttcatcattaggttgagttcgtacaaagacttgtagtggcttttgtgctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3245995 |
tcaattaatttgatacacaacaaattagtgataatgaagcataccaaactttcatcattaggttgagttcgtacaaagacttgtagaggcttttgtgctg |
3246094 |
T |
|
| Q |
201 |
tgggaaactctagtcttgctcttttgcttgaatcaatgttaggtattgacccaatttgatgatttgaacttatgattcccctatg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3246095 |
tgggaaactctagtcttgctcttttgcttgaatcaatgttaggtattgactcaatttgatgatttgaacttatgattcccctatg |
3246179 |
T |
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