View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3356_low_24 (Length: 265)
Name: NF3356_low_24
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 44069176 - 44069401
Alignment:
| Q |
18 |
ctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccctcagatattgtcttatagttcccacttccatcttgtgcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44069176 |
ctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccctcagatattgtcttatagttcccacttccatcttgtgcaac |
44069275 |
T |
|
| Q |
118 |
cacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaagaagctttctatctgaccctgaaagccaatatggaaatccatctgataacaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44069276 |
cacaatatcagctcttggtcctgtccctgaccccggtgttgcctgaagaagctttctatctgaccctgaaagccaatatgaaaatccatctgataacaac |
44069375 |
T |
|
| Q |
218 |
cttctccctccgttttgcttagtact |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44069376 |
cttctccctccgttttgcttagtact |
44069401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 44094425 - 44094650
Alignment:
| Q |
18 |
ctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccctcagatattgtcttatagttcccacttccatcttgtgcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44094425 |
ctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccctcagatattgtcttatagttcccacttccatcttgtgcaac |
44094524 |
T |
|
| Q |
118 |
cacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaagaagctttctatctgaccctgaaagccaatatggaaatccatctgataacaac |
217 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44094525 |
cacaatatcagctcttggtcctatccctgaccccggtgttgcctgaagaagctttctatctgaccctgaaagccaatatggaaatccatctgataacaac |
44094624 |
T |
|
| Q |
218 |
cttctccctccgttttgcttagtact |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44094625 |
cttctccctccgttttgcttagtact |
44094650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 44086026 - 44085801
Alignment:
| Q |
18 |
ctttcagatgaataaccactctcccttttccactaagcttagcagctgcagccacaccctcagatattgtcttatagttcccacttccatcttgtgcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44086026 |
ctttcagatgaataaccactctccctttcccactaagcttagcagctgcagccacaccgtcagatattgtcttatagttcccacttccatcttgtgcaac |
44085927 |
T |
|
| Q |
118 |
cacaatatcagctcttggtcctgtccctgaccccggtagtgcctgaagaagctttctatctgaccctgaaagccaatatggaaatccatctgataacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44085926 |
cacaatatcagctcttggtcctgtccctgaacccggtgttgcctgaagaagctttctatctgaccctgaaagccaatatggaaatccatctgataacaac |
44085827 |
T |
|
| Q |
218 |
cttctccctccgttttgcttagtact |
243 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
44085826 |
cttctccctccgttttgcttagtact |
44085801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 243
Target Start/End: Complemental strand, 44085748 - 44085704
Alignment:
| Q |
199 |
aaatccatctgataacaaccttctccctccgttttgcttagtact |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44085748 |
aaatccatctgataacaaccttctccctccgttttgcttagtact |
44085704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University