View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3356_low_25 (Length: 263)
Name: NF3356_low_25
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 37347298 - 37347071
Alignment:
| Q |
16 |
acatcatcaaaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttga |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37347298 |
acatcctcaaaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttatagacaaattcacttttga |
37347199 |
T |
|
| Q |
116 |
aatattcaggacagacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggta |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37347198 |
aatattcaggacagacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggta |
37347099 |
T |
|
| Q |
216 |
aacatgttcagcgattctggaacattct |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
37347098 |
aacatgttcagcgattctggaacattct |
37347071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 39220127 - 39219904
Alignment:
| Q |
16 |
acatcatcaaaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttga |
115 |
Q |
| |
|
||||| ||||| |||||||| |||||||| | |||||||||||||||||| |||||||| |||||||||||||| ||||| || |||| |||||||||| |
|
|
| T |
39220127 |
acatcctcaaagtaatcaaacacatcatagagaatacttgttatatcttcagttggactgtcctgcaaccaaagtgttttgtactcaaaatcacttttga |
39220028 |
T |
|
| Q |
116 |
aatattcaggacagacaaacccaacacaattaagcacgtgagtaatcccattctttcttaaaacctcatgattcttcgccactgtgtcgcttcctaggta |
215 |
Q |
| |
|
|||| || ||||| ||||| |||||||| |||||||| || || || || || | ||| | || ||||| || || ||||||||||| ||||| | ||| |
|
|
| T |
39220027 |
aatactcgggacaaacaaaaccaacacagttaagcacatgtgttattcctttttctctgagaagttcatggtttttggccactgtgtcacttcccaagta |
39219928 |
T |
|
| Q |
216 |
aacatgttcagcgattctggaaca |
239 |
Q |
| |
|
|| ||||||||| ||||| ||||| |
|
|
| T |
39219927 |
aatatgttcagcaattcttgaaca |
39219904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 7599248 - 7599096
Alignment:
| Q |
16 |
acatcatcaaaataatcaaaaacatcatacaaaatacttgttatatcttctgttggactatcctgcaaccaaagagttttataaacaaattcacttttga |
115 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||| ||||| || ||||| || | ||||| || || ||||| | ||| |||| ||||| |||| ||| | |
|
|
| T |
7599248 |
acatcctcaaagtaatcaaacacatcatacaatatactagtaatatcctcactaggactgtcttgtaaccacaaagtcctatacacaaaatcacctttaa |
7599149 |
T |
|
| Q |
116 |
aatattcaggacagacaaacccaacacaattaagcacgtgagtaatcccattc |
168 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| | || ||||||||||||||| |
|
|
| T |
7599148 |
aatactcaggacacacaaaaccaacacaattcaaaacatgagtaatcccattc |
7599096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University