View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_32 (Length: 250)
Name: NF3356_low_32
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 51849199 - 51849433
Alignment:
| Q |
16 |
atccaaaacatttcaaattccagacaactattcggtactctgtcttgtggtagcagttcacgttagttcaagcttacattattagaccaggtcacattat |
115 |
Q |
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| T |
51849199 |
atccaaaacatttcaaattccagaaaactattcggtactctgtcttgtggtagcagttcacgttagttcaagcttacaatattagaccaggtcacattat |
51849298 |
T |
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| Q |
116 |
tataacatnnnnnnntcatcatgattataatctaagctccgcagaataataaagaaaggtcgacattttaaaaggtaacagtcattttgatatctgaatg |
215 |
Q |
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| T |
51849299 |
tataacataaaaaaatcatcatgattataatctaagctccgcagaataataaagaaaggttgacattttaaaaggtaacagttattttgatatctgaatg |
51849398 |
T |
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| Q |
216 |
tgtaatgagtagtcatagtacctattaaaatggtc |
250 |
Q |
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| T |
51849399 |
tgtaatgagtagtcatagtacctattaaaatggtc |
51849433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 45392286 - 45392327
Alignment:
| Q |
189 |
ggtaacagtcattttgatatctgaatgtgtaatgagtagtca |
230 |
Q |
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| T |
45392286 |
ggtaatagtcattttgattcctgaatgtgtaatgagtagtca |
45392327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 51889755 - 51889796
Alignment:
| Q |
189 |
ggtaacagtcattttgatatctgaatgtgtaatgagtagtca |
230 |
Q |
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| T |
51889755 |
ggtaatagtcattttgatctctgaatgtgtaaggagtagtca |
51889796 |
T |
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