View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_33 (Length: 249)

Name: NF3356_low_33
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_33
NF3356_low_33
[»] chr3 (10 HSPs)
chr3 (1-244)||(38867236-38867469)
chr3 (71-238)||(39193930-39194090)
chr3 (6-244)||(30859397-30859631)
chr3 (13-184)||(563566-563740)
chr3 (13-182)||(530500-530672)
chr3 (85-184)||(573370-573469)
chr3 (8-184)||(553458-553637)
chr3 (81-184)||(486515-486618)
chr3 (81-153)||(14963514-14963586)
chr3 (72-132)||(30866995-30867054)
[»] chr6 (6 HSPs)
chr6 (71-184)||(33466551-33466664)
chr6 (6-184)||(34728745-34728923)
chr6 (75-184)||(34605095-34605204)
chr6 (75-184)||(34726372-34726481)
chr6 (73-184)||(3047467-3047578)
chr6 (6-54)||(3047619-3047667)
[»] chr4 (2 HSPs)
chr4 (6-184)||(55773149-55773330)
chr4 (6-184)||(55837360-55837541)
[»] chr5 (2 HSPs)
chr5 (74-181)||(1205155-1205262)
chr5 (81-184)||(31265968-31266071)
[»] chr1 (5 HSPs)
chr1 (81-184)||(49541316-49541419)
chr1 (81-184)||(47987401-47987504)
chr1 (84-184)||(49441193-49441294)
chr1 (81-152)||(41185222-41185293)
chr1 (81-184)||(45195941-45196044)
[»] chr7 (1 HSPs)
chr7 (81-154)||(32348249-32348322)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38867236 - 38867469
Alignment:
Q  1 ttggccatctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaacatgggacctttggacaagtaatggttcttggaatg 100  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38867236 ttggccatctttaagtgataaactttttggtgagataagctgataaaggaaaaaacattcttaacacgggacctttggacaagtaatggttcttggaatg 38867335  T
Q  101 ccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatctatcattctggaaagtgg 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||         
T  38867336 ccatgaaattcctccaataaattttatgaaatgcccgccaattcttgcacacactaccaaattggaagagatcgtcaaaatctatcattctggaa----- 38867430  T
Q  201 aaatgatatctaacaaatcccaaggaagctgacaattctctgct 244  Q
         |||||||||||||||||||||||||||||||||||||||    
T  38867431 -----atatctaacaaatcccaaggaagctgacaattctctgct 38867469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 238
Target Start/End: Original strand, 39193930 - 39194090
Alignment:
Q  71 acctttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagag 170  Q
    |||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||||| |||||||||| | ||| |||||||||||||| || |     
T  39193930 acctttggacaagtaatggttcttgggatgttatgaaattcctccaataaattttatgaaattcccgccaattttcgcatacactaccaaattgaaacat 39194029  T
Q  171 gtcaccaaaatctatcattctggaaagtggaaatgatatctaacaaatcccaaggaagctgacaattc 238  Q
    |||| ||||||||| |||||       ||| ||||||||| | ||||||||||||||| |||||||||    
T  39194030 gtcatcaaaatctagcattc-------tggtaatgatatcaagcaaatcccaaggaagttgacaattc 39194090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 244
Target Start/End: Original strand, 30859397 - 30859631
Alignment:
Q  6 catctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaac---atgggacctttggacaagtaatggttcttggaatgcc 102  Q
    ||||||||||||| ||||||| ||||||| |||||| || |||||||||   | |||||    |   |||||||||| ||||||||| |||||| ||||     
T  30859397 catctttgagtgaaaaactttatggtgaggtaagctgatgaaggaaaaagattgcttaaacgaagaagacctttggataagtaatggctcttgggatgct 30859496  T
Q  103 atgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatctatcattctggaaagtggaa 202  Q
    ||||||||||||||||| ||||| | |||| | |||||||||||  |||||||||||||||  || | |||| ||||||||| |||||       | ||     
T  30859497 atgaaattcctccaataaattttgtaaaattcacgccaattcttcgacacactaccaaattcaaacaagtcatcaaaatctaacattc-------ttgag 30859589  T
Q  203 atgatatctaacaaatcccaaggaagctgacaattctctgct 244  Q
    |||||||| | ||||||||||||||| |||||| ||||||||    
T  30859590 atgatatcaagcaaatcccaaggaagttgacaactctctgct 30859631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 563566 - 563740
Alignment:
Q  13 gagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaacatggga---cctttggacaagtaatggttcttggaatgccatgaaat 109  Q
    ||||||||||||||||||| || |||||| || |||||||||   |||| |  ||||||   | |||| ||||||||||||||||   |||||| |||||    
T  563566 gagtgataaactttttggtcaggtaagctgatgaaggaaaaagatttctcataatgggaagacttttgaacaagtaatggttcttcagatgccaagaaat 563665  T
Q  110 tcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    | ||| |||| |||||||||||| ||| ||||||||||||||||| | ||||||  ||||||||  |||||||||    
T  563666 ttctcaaataaattttatgaaattccctccaattcttgcacacaccagcaaattcaaagaggtcgtcaaaatcta 563740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 182
Target Start/End: Original strand, 530500 - 530672
Alignment:
Q  13 gagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaacatggga---cctttggacaagtaatggttcttggaatgccatgaaat 109  Q
    ||||||||||||||| ||| || |||||| || |||||||||   |||| |  ||||||   | |||| ||||||||||||||||   |||||| |||||    
T  530500 gagtgataaacttttcggtcaggtaagctgatgaaggaaaaatatttctcataatgggaagacttttgaacaagtaatggttcttcagatgccaagaaat 530599  T
Q  110 tcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatc 182  Q
    | |||||||| | |||||||||| ||| ||||||||||||||||| | ||||||  ||||||||  |||||||    
T  530600 ttctccaataaaatttatgaaattccctccaattcttgcacacaccagcaaattcaaagaggtcgtcaaaatc 530672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 573370 - 573469
Alignment:
Q  85 aatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    ||||||||||||||||||| ||| ||  |||||||  ||||||||||| ||| ||||||||||||||||| | | ||||| ||||||||| | |||||||    
T  573370 aatggttcttggaatgccaagaactttttccaataagttttatgaaattccctccaattcttgcacacaccagcgaattgaaagaggtcatcgaaatcta 573469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 553458 - 553637
Alignment:
Q  8 tctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaacatggga---cctttggacaagtaatggttcttggaatgccat 104  Q
    |||| ||||||||||||||| ||| || || ||| || ||||||||    |||||| |||||||   | |||| | |||||||||||| |||| |||||     
T  553458 tcttcgagtgataaacttttcggtcagctatgctgatgaaggaaaaggatttcttatcatgggaagacttttgaataagtaatggttcctggagtgccaa 553557  T
Q  105 gaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    ||| ||  ||||||| |||||||||||| ||| ||||||||||||||| | | | ||||| ||||||||| | |||||||    
T  553558 gaactttttccaataaattttatgaaattccctccaattcttgcacaccccagcgaattgaaagaggtcatcgaaatcta 553637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 486515 - 486618
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaa 180  Q
    |||||||||||||||| |||||| ||| ||  |||| ||  ||||||||||  ||| ||||||||||||||| | |  |||||| ||||||||| | |||    
T  486515 aagtaatggttcttgggatgccaagaactttttccagtaagttttatgaaactccctccaattcttgcacacgccagaaaattgaaagaggtcatcgaaa 486614  T
Q  181 tcta 184  Q
    ||||    
T  486615 tcta 486618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 14963586 - 14963514
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacaca 153  Q
    |||||||||||||||| |||||| |||||| |||||  |  ||| |||||| | || ||||||||||||||||    
T  14963586 aagtaatggttcttgggatgccaagaaatttctccagcagctttcatgaaaagtcctccaattcttgcacaca 14963514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 30866995 - 30867054
Alignment:
Q  72 cctttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaat 132  Q
    |||||| |||||||| ||||||||| || |||||||||||||||||   ||||||||||||    
T  30866995 cctttgaacaagtaa-ggttcttgggattccatgaaattcctccaaacaattttatgaaat 30867054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 33466551 - 33466664
Alignment:
Q  71 acctttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagag 170  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||| ||||| ||||||||||| || |||||    
T  33466551 acctttggacaagtaatggttcttggaatgccatgaaattccttcaataaattttatgaaattctcgccaatttttgcatacactaccaaactgaaagag 33466650  T
Q  171 gtcaccaaaatcta 184  Q
    |||| |||||||||    
T  33466651 gtcatcaaaatcta 33466664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 34728923 - 34728745
Alignment:
Q  6 catctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattcttaacatgggacctttggacaagtaatggttcttggaatgccatg 105  Q
    ||||||||||||||||||||| | ||||| ||||||||  |||   |||   ||||||| |  | |||||||||||||||| ||||||| | ||||||||    
T  34728923 catctttgagtgataaactttatcgtgaggtaagctcaagaagttgaaagatttcttaaaagcgcacctttggacaagtaacggttcttcggatgccatg 34728824  T
Q  106 aaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| |||||||||||||| | ||||||| |||||||||    
T  34728823 aaattcctccaataaattttatgaaattctcgccaatttttgcatacactaccaaattgaatgaggtcatcaaaatcta 34728745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 34605204 - 34605095
Alignment:
Q  75 ttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtca 174  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||| | |||||||| ||||| |||||||||||||| |||||||||    
T  34605204 ttggataagtaatggttcttcggatgccatgaaattcctccaataaattttatgaaattctcgccaatttttgcatacactaccaaattgaaagaggtca 34605105  T
Q  175 ccaaaatcta 184  Q
     |||||||||    
T  34605104 tcaaaatcta 34605095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 34726481 - 34726372
Alignment:
Q  75 ttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtca 174  Q
    ||||| |||||||||||||| | |||||||||||||||||||||| |||||||||||| | |||||||| ||||| |||||||||||||| |||||||||    
T  34726481 ttggataagtaatggttcttcggatgccatgaaattcctccaataaattttatgaaattctcgccaatttttgcatacactaccaaattgaaagaggtca 34726382  T
Q  175 ccaaaatcta 184  Q
     |||||||||    
T  34726381 tcaaaatcta 34726372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 3047578 - 3047467
Alignment:
Q  73 ctttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggt 172  Q
    ||||||| |||||||||||||||| |||||||  ||||||||||||| ||||||||||||  ||||||||| |||||||| ||||||||||| |||||||    
T  3047578 ctttggagaagtaatggttcttgggatgccatataattcctccaataaattttatgaaatttccgccaattgttgcacacgctaccaaattgaaagaggt 3047479  T
Q  173 caccaaaatcta 184  Q
    || |||||||||    
T  3047478 catcaaaatcta 3047467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Complemental strand, 3047667 - 3047619
Alignment:
Q  6 catctttgagtgataaactttttggtgagataagctcataaaggaaaaa 54  Q
    ||||||||||||||||||||| ||||||| || ||| || |||||||||    
T  3047667 catctttgagtgataaactttatggtgaggtatgctgatgaaggaaaaa 3047619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 55773330 - 55773149
Alignment:
Q  6 catctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattctt-aacatgg--gacctttggacaagtaatggttcttggaatgcc 102  Q
    |||||||||| ||||||||||||||| || || ||| ||||||||||||   ||||| || | ||  ||| |||| ||||||||||||||||| ||||||    
T  55773330 catctttgagcgataaactttttggttaggtatgctgataaaggaaaaagatttcttgaaaaaggaagacttttgaacaagtaatggttcttgtaatgcc 55773231  T
Q  103 atgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    | |||||| ||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||| ||| |||| ||||    
T  55773230 aagaaatttctccaatacattttatgaaatgccctccaattcttacacacacaagcaaattgaaagagatcatcaaagtcta 55773149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 184
Target Start/End: Complemental strand, 55837541 - 55837360
Alignment:
Q  6 catctttgagtgataaactttttggtgagataagctcataaaggaaaaaacattctt-aacatgg--gacctttggacaagtaatggttcttggaatgcc 102  Q
    |||||||||| ||||||||||||||| || || ||| ||||||||||||   ||||| || | ||  ||| |||| ||||||||||||||||| ||||||    
T  55837541 catctttgagcgataaactttttggttaggtatgctgataaaggaaaaagatttcttgaaaaaggaagacttttgaacaagtaatggttcttgtaatgcc 55837442  T
Q  103 atgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatcta 184  Q
    | |||||| ||||||||||||||||||||||||| ||||||||| ||||||| | ||||||| ||||| ||| |||| ||||    
T  55837441 aagaaatttctccaatacattttatgaaatgccctccaattcttacacacacaagcaaattgaaagagatcatcaaagtcta 55837360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 1205155 - 1205262
Alignment:
Q  74 tttggacaagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtc 173  Q
    ||||||||||||||| ||||||  ||||||||||||| |||||||| ||||||||||||  || |||||||||||||||| |||||||||| ||||||||    
T  1205155 tttggacaagtaatgattcttgagatgccatgaaatttctccaataaattttatgaaattgccaccaattcttgcacacattaccaaattgaaagaggtc 1205254  T
Q  174 accaaaat 181  Q
    | ||||||    
T  1205255 atcaaaat 1205262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 31266071 - 31265968
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaa 180  Q
    |||||||||||||||| |||||| |||||| ||||||||  |||||||||| |||| |||||||||||||||||  ||||| || ||| ||||  |||||    
T  31266071 aagtaatggttcttgggatgccaagaaatttctccaataatttttatgaaaagccctccaattcttgcacacaccgccaaactgaaagtggtcgtcaaaa 31265972  T
Q  181 tcta 184  Q
    ||||    
T  31265971 tcta 31265968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 49541316 - 49541419
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaa 180  Q
    |||||||||||||||| |||||| |||||  |||||||| ||||||||||| |||| ||||||||| ||||| | | ||||||| ||||||||  |||||    
T  49541316 aagtaatggttcttgggatgccaagaaatctctccaataaattttatgaaaagccctccaattcttacacactccatcaaattgaaagaggtcgtcaaaa 49541415  T
Q  181 tcta 184  Q
    ||||    
T  49541416 tcta 49541419  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 184
Target Start/End: Original strand, 47987401 - 47987504
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaa 180  Q
    |||||| ||||||||| |||||| |||||| ||| | || ||||||||||||| || ||||||||||||||||| | ||||||| ||| ||||  |||||    
T  47987401 aagtaaaggttcttgggatgccaagaaatttctcgagtaaattttatgaaatgtcctccaattcttgcacacaccagcaaattgaaagtggtcgacaaaa 47987500  T
Q  181 tcta 184  Q
    ||||    
T  47987501 tcta 47987504  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 49441193 - 49441294
Alignment:
Q  84 taatggttcttggaatgccatgaaattcctccaatacattttatgaaatg-cccgccaattcttgcacacactaccaaattggaagaggtcaccaaaatc 182  Q
    ||||||||||||| |||||| |||||| ||||| || |||||| |||| | ||| |||||||||||||||||   |||| || ||||||||  |||||||    
T  49441193 taatggttcttgggatgccaagaaatttctccagtaaattttacgaaaagcccctccaattcttgcacacaccggcaaactgaaagaggtcgtcaaaatc 49441292  T
Q  183 ta 184  Q
    ||    
T  49441293 ta 49441294  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 41185293 - 41185222
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacac 152  Q
    |||||||||||||||| ||||||  ||||| |||||||| | |||||||||   || |||||||||||||||    
T  41185293 aagtaatggttcttgggatgccaaaaaatttctccaataaaatttatgaaaaatcctccaattcttgcacac 41185222  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 45196044 - 45195941
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacactaccaaattggaagaggtcaccaaaa 180  Q
    |||||||||||||||  ||| ||  ||| | |||||||| ||||||||||| |||| |||||||||||| ||||    |||||| ||| ||||| |||||    
T  45196044 aagtaatggttcttgagatgtcaaaaaaattctccaataaattttatgaaaagccctccaattcttgcatacaccggaaaattgaaagtggtcatcaaaa 45195945  T
Q  181 tcta 184  Q
    ||||    
T  45195944 tcta 45195941  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 32348249 - 32348322
Alignment:
Q  81 aagtaatggttcttggaatgccatgaaattcctccaatacattttatgaaatgcccgccaattcttgcacacac 154  Q
    |||||||||||||||| | | || |||||| |||||||| ||||||||||| |||| |||||||||||||||||    
T  32348249 aagtaatggttcttgggacgtcaagaaatttctccaataaattttatgaaaagccctccaattcttgcacacac 32348322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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