View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3356_low_35 (Length: 236)
Name: NF3356_low_35
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3356_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21782382 - 21782162
Alignment:
| Q |
1 |
cttgctaacaacaccgttcctcagcaactgaggaaaaaacaaccaattcccggtaacagccaaaaatgcaactgtaagcggacccgacacagcacggtgc |
100 |
Q |
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| T |
21782382 |
cttgctcacaacaccattcctcagcaactgaggaaaaaacaaccaattcccggtaacagccaaaaatgtaattgtaagcggacccgacacagcacggtgc |
21782283 |
T |
|
| Q |
101 |
aatcgccacccacgacgaagaagaatcttcttaaccgcaacctcaacagacgtacacacaccatgaagtacaaaaaaccatgtgacttcccacgtgggag |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21782282 |
aaccgccacccacgacgaagaagaatcttcttaaccgcaacctcaacagacgtacacacaccatgaagtacaaaaaaccatgtgacttcccacgtgggag |
21782183 |
T |
|
| Q |
201 |
gcgcgcgtgcaaggtaataat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
21782182 |
gcgcgcgtgcaaggtaataat |
21782162 |
T |
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