View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_5 (Length: 522)

Name: NF3356_low_5
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_5
NF3356_low_5
[»] chr3 (13 HSPs)
chr3 (203-514)||(25084531-25084843)
chr3 (1-135)||(25084911-25085045)
chr3 (1-132)||(24497434-24497565)
chr3 (1-132)||(24923635-24923766)
chr3 (1-135)||(24920061-24920195)
chr3 (1-132)||(24981922-24982053)
chr3 (1-132)||(21584772-21584903)
chr3 (228-464)||(24923858-24924096)
chr3 (1-132)||(31825732-31825863)
chr3 (228-432)||(24920257-24920471)
chr3 (203-349)||(24981719-24981866)
chr3 (209-402)||(31825933-31826127)
chr3 (290-358)||(21585022-21585090)
[»] chr8 (1 HSPs)
chr8 (4-132)||(14261210-14261338)
[»] chr7 (3 HSPs)
chr7 (19-131)||(39955038-39955150)
chr7 (4-131)||(10575264-10575391)
chr7 (1-95)||(354317-354411)
[»] chr2 (1 HSPs)
chr2 (12-128)||(41027452-41027568)
[»] chr4 (3 HSPs)
chr4 (19-128)||(22898433-22898542)
chr4 (19-128)||(22950101-22950210)
chr4 (19-68)||(53328654-53328703)


Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 203 - 514
Target Start/End: Complemental strand, 25084843 - 25084531
Alignment:
Q  203 aattgtgagtgggaaagagagaaacggatctgagtatttatgaatggtagttggtagctagcgggatgaataagagggaaactcaaatttgtgtttttct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25084843 aattgtgagtgggaaagagagaaacggatctgagtatttatgaatggtagttggtagctagcgggatgaataagagggaaactcaaatttgtgtttttct 25084744  T
Q  303 ctgcgtcgttggatttcaacttatcgacggtctaaattagcgatccgtgcgtattgagaaaaataataatgaccgtcgataagtatatttgaacggtccg 402  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25084743 ctgcgtcgttggatttcaacttattgacggtctaaattagcgatccgtgcgtattgagaaaaataataatgaccgtcgatgagtatatttgaacggtccg 25084644  T
Q  403 ttttcattttaatgcgtctgtgcggatcagcgcttcctacctttgtgctagtttttgcgttttttatggaggctgtata-tttatttagttacattattt 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25084643 ttttcattttaatgcgtctgtgcggatcagcgcttcctacctttgtgctagtttttgcgttttttatggaggctgtatattttatttagttacattattt 25084544  T
Q  502 gtatgcctatgct 514  Q
    |||||||||||||    
T  25084543 gtatgcctatgct 25084531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 25085045 - 25084911
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  25085045 ccacctcttctcgccaatctacgaatggcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttcccaatc 25084946  T
Q  101 ccttacctccctttccacgacctgacattttcgcg 135  Q
    |||||||||||||||||||||||||||||||||||    
T  25084945 ccttacctccctttccacgacctgacattttcgcg 25084911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 24497434 - 24497565
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  24497434 ccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttgtcacgaagaaccttcctatgcctctttgcacctccctttccgagtc 24497533  T
Q  101 ccttacctccctttccacgacctgacattttc 132  Q
    ||||||||||||||||||| ||||||||||||    
T  24497534 ccttacctccctttccacgccctgacattttc 24497565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 24923635 - 24923766
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  24923635 ccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaacctttctatgcctctttgcacctccctttccgagtc 24923734  T
Q  101 ccttacctccctttccacgacctgacattttc 132  Q
    ||||||||||||| ||||||||||||||||||    
T  24923735 ccttacctcccttaccacgacctgacattttc 24923766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 24920061 - 24920195
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  24920061 ccacctcttcttgccaatcgacgaattgcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcccaatc 24920160  T
Q  101 ccttacctccctttccacgacctgacattttcgcg 135  Q
    ||||||||||||||||||| || ||||||||||||    
T  24920161 ccttacctccctttccacggccagacattttcgcg 24920195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 24982053 - 24981922
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  24982053 ccacctcttcttgccaatcgacgaatagcaggcttggtgataccctggatgttatcacgaagaactttcctatgcctctttgcacctccctttcctagtc 24981954  T
Q  101 ccttacctccctttccacgacctgacattttc 132  Q
    |||||||||| |||||||| ||||||||||||    
T  24981953 ccttacctccttttccacgccctgacattttc 24981922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 21584772 - 21584903
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    ||||||||||| |||||||||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| || |||||||||||||||||||| ||||    
T  21584772 ccacctcttctcgccaatcgacgaatcgctggcttggtgattccctgaatgttatcacgaagaactttcctgtgtctctttgcacctccctttcctagtc 21584871  T
Q  101 ccttacctccctttccacgacctgacattttc 132  Q
    ||||||||||||||||||||||||||||||||    
T  21584872 ccttacctccctttccacgacctgacattttc 21584903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 228 - 464
Target Start/End: Original strand, 24923858 - 24924096
Alignment:
Q  228 ggatctgagtatttatgaatggtagttggtagctag--cgggatgaataagagggaaactcaaatttgtgtttttctctgcgtcgttggatttcaactta 325  Q
    |||||||||||||||| ||||||| |||||||  ||  ||||| ||| ||||||||| ||||| ||||||||||  ||||||||||||||||| || |||    
T  24923858 ggatctgagtatttatcaatggtaattggtagtgagagcgggaggaagaagagggaa-ctcaattttgtgttttcttctgcgtcgttggattttaagtta 24923956  T
Q  326 tcgacggtctaaattagcgatccgtgcgtattgagaaaaataataatgaccgtcgataagtatatttgaacggtccgttttcatttt-aatgcgtctgtg 424  Q
    |||||||| || |||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||  | | |||||||  || || |||||    
T  24923957 tcgacggtttatattagcgatccgtgcgtattgagaaaaagaatagtgaacgtcgataagtttatttgaacggtgagatatcattttggattcgcctgtg 24924056  T
Q  425 cggatcagcgcttcctacctttgtgctagtttttgcgttt 464  Q
    ||||||||| ||| || |||||| | ||||||||| ||||    
T  24924057 cggatcagcactttcttcctttgcgttagtttttgtgttt 24924096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31825732 - 31825863
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtc 100  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| || || ||||| || || ||||| ||||||||||||||||| || |    
T  31825732 ccacctcttctcgccaatcgacgaatggcaggcttagtgataccctggatgttgtcgcggagaacttttctgtgcctttttgcacctccctttcctagcc 31825831  T
Q  101 ccttacctccctttccacgacctgacattttc 132  Q
    ||||||||||||| ||||||||||||||||||    
T  31825832 ccttacctcccttaccacgacctgacattttc 31825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 228 - 432
Target Start/End: Original strand, 24920257 - 24920471
Alignment:
Q  228 ggatctgagtatttatgaatggtagttggtagctagcgggatga---------ataagagggaaactcaaatttgtgtttttctctgcgtcgttggattt 318  Q
    ||||||||||||||||| |||||| |||| ||| ||||||||||         | |||||||||||| || ||||||||||  |||| ||||||||||||    
T  24920257 ggatctgagtatttatgtatggtaattggaagcgagcgggatgaggatgaagaagaagagggaaactgaattttgtgttttcttctgtgtcgttggattt 24920356  T
Q  319 caacttatcgacggtctaaattagcgatccgtgcgta-ttgagaaaaataataatgaccgtcgataagtatatttgaacggtccgttttcattttaatgc 417  Q
    |||||||||||||||||| |||||||||||| | ||| || |  |||| |||| ||| ||| |||||||||||||||||||||||||||||||| |||      
T  24920357 caacttatcgacggtctatattagcgatccgcgtgtagttcaccaaaacaatactgaacgttgataagtatatttgaacggtccgttttcatttgaatta 24920456  T
Q  418 gtctgtgcggatcag 432  Q
    | |||||||||||||    
T  24920457 gcctgtgcggatcag 24920471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 203 - 349
Target Start/End: Complemental strand, 24981866 - 24981719
Alignment:
Q  203 aattgtgagtgggaaaga-gagaaacggatctgagtatttatgaatggtagttggtagctagcgggatgaataagagggaaactcaaatttgtgtttttc 301  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||||    |||| |||||| ||||||||||||||||| || ||||||||||      
T  24981866 aattgtgagtgggaaaaaagagaagcggatctgagtatttatgaatggtagcgactagcgagcgggttgaataagagggaaactgaattttgtgttttga 24981767  T
Q  302 tctgcgtcgttggatttcaacttatcgacggtctaaattagcgatccg 349  Q
    |||| |||||||||||||| |||||||||| |||| ||||||||||||    
T  24981766 tctgagtcgttggatttcatcttatcgacgatctatattagcgatccg 24981719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 402
Target Start/End: Original strand, 31825933 - 31826127
Alignment:
Q  209 gagtgggaaagagagaaacggatctgagtatttatgaat-ggtagttggtagctagcgggatgaataagagggaaactcaaatttgtgtttttctctgcg 307  Q
    |||||||||||||||||  |||||||||||||||||||| ||| |  |   |  ||||||||||||||||||| |||| || ||||||||||  |||  |    
T  31825933 gagtgggaaagagagaaggggatctgagtatttatgaatgggtgggagcgtgagagcgggatgaataagaggg-aactgaattttgtgttttgatctcag 31826031  T
Q  308 tcgttggatttcaacttatcgacggtctaaattagcgatccgtgcgtattg-agaaaaataataatgaccgtcgataagtatatttgaacggtccg 402  Q
    ||||||||||| |  | || |||||| |||  | |||||||||||||||||  ||||   ||| |||| ||| ||||||| |||||||||| ||||    
T  31826032 tcgttggatttgatgtaatagacggtgtaagattgcgatccgtgcgtattgcggaaagcgaatgatgaacgttgataagtgtatttgaacgctccg 31826127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 21585022 - 21585090
Alignment:
Q  290 tttgtgtttttctctgcgtcgttggatttcaacttatcgacggtctaaattagcgatccgtgcgtattg 358  Q
    ||||||||||  | || |||||||||||| |  | ||||||||| |||||| |||||||||||||||||    
T  21585022 tttgtgttttgatatgggtcgttggattttacgtaatcgacggtttaaattggcgatccgtgcgtattg 21585090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 132
Target Start/End: Original strand, 14261210 - 14261338
Alignment:
Q  4 cctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtccct 103  Q
    |||||||| || ||||| ||||| || ||||| ||||| || |||||||| |||||||| || || | ||| |||||||||||||||||||| | |||||    
T  14261210 cctcttctcgctaatcgccgaatcgctggctttgtgattccttggatgttgtcacgaagcactttgcgatgtctctttgcacctccctttcctaatccct 14261309  T
Q  104 tacctccctttccacgacctgacattttc 132  Q
    |||||||||||||||||||||||||||||    
T  14261310 tacctccctttccacgacctgacattttc 14261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 39955038 - 39955150
Alignment:
Q  19 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccac 118  Q
    |||||||| ||||||||||| || || |||||||| || ||||||||||| || ||||||||||| ||||||||||||| |||||| ||||| |||||||    
T  39955038 cgacgaatcgcaggcttggttatgccttggatgttgtcgcgaagaacctttctgtgcctctttgctcctccctttcccaatccctttcctccttttccac 39955137  T
Q  119 gacctgacatttt 131  Q
    |||||||||||||    
T  39955138 gacctgacatttt 39955150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 10575391 - 10575264
Alignment:
Q  4 cctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtccct 103  Q
    |||||||| |||||||||||||| || ||||| ||||| || |||||||| ||||| |||||||| | ||| ||||||||||| |||||||| | ||| |    
T  10575391 cctcttctcgccaatcgacgaatcgctggctttgtgattccttggatgttgtcacggagaaccttgcgatgtctctttgcacccccctttcctaatcctt 10575292  T
Q  104 tacctccctttccacgacctgacatttt 131  Q
    ||||||||||||||||||| ||||||||    
T  10575291 tacctccctttccacgaccagacatttt 10575264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 354411 - 354317
Alignment:
Q  1 ccacctcttcttgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcc 95  Q
    ||||||||||| ||||||| |||||| || ||||| || || || || |||||| | | ||||||||| ||||| | ||||||||||||||||||    
T  354411 ccacctcttctcgccaatctacgaatcgctggctttgttattccttgaatgttaccgcaaagaaccttgctatgtcactttgcacctccctttcc 354317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 41027568 - 41027452
Alignment:
Q  12 tgccaatcgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccc 111  Q
    |||||| |||||||| |||||||| || || || || |||||||||||||| ||||| |  || |  ||||| ||||||||||||| |||||| || ||     
T  41027568 tgccaaacgacgaatcgcaggcttcgtaattccttgaatgttatcacgaagcaccttacggtgtcgttttgctcctccctttcccaatccctttccacct 41027469  T
Q  112 tttccacgacctgacat 128  Q
    |||||||| || |||||    
T  41027468 tttccacgtccagacat 41027452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 22898542 - 22898433
Alignment:
Q  19 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccac 118  Q
    |||||||| || ||||| || || ||||||||||| |||||||| ||||| | ||| | |||||| || ||||||||||  ||||| || || |||||||    
T  22898542 cgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccac 22898443  T
Q  119 gacctgacat 128  Q
    | || |||||    
T  22898442 gcccagacat 22898433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 22950210 - 22950101
Alignment:
Q  19 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaaccttcctatgcctctttgcacctccctttcccagtcccttacctccctttccac 118  Q
    |||||||| || ||||| || || ||||||||||| |||||||| ||||| | ||| | |||||| || ||||||||||  ||||| || || |||||||    
T  22950210 cgacgaatcgctggctttgttattccctggatgttgtcacgaagcaccttacgatgtcgctttgctccaccctttcccaaaccctttccaccttttccac 22950111  T
Q  119 gacctgacat 128  Q
    | || |||||    
T  22950110 gcccagacat 22950101  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 53328703 - 53328654
Alignment:
Q  19 cgacgaatggcaggcttggtgataccctggatgttatcacgaagaacctt 68  Q
    |||||||| |||||||| ||||| |||||||||||||| || ||||||||    
T  53328703 cgacgaatcgcaggctttgtgattccctggatgttatcgcgcagaacctt 53328654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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