View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3356_low_8 (Length: 491)

Name: NF3356_low_8
Description: NF3356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3356_low_8
NF3356_low_8
[»] chr8 (1 HSPs)
chr8 (14-491)||(37347269-37347758)
[»] chr5 (3 HSPs)
chr5 (150-443)||(24153381-24153686)
chr5 (50-126)||(24153719-24153794)
chr5 (212-261)||(24904335-24904384)
[»] chr6 (2 HSPs)
chr6 (150-455)||(26670891-26671208)
chr6 (150-455)||(26673419-26673736)
[»] chr2 (1 HSPs)
chr2 (150-455)||(1300236-1300553)
[»] chr3 (5 HSPs)
chr3 (272-490)||(39220099-39220317)
chr3 (59-243)||(39220325-39220509)
chr3 (345-453)||(45146402-45146510)
chr3 (187-283)||(45146248-45146351)
chr3 (47-112)||(45146121-45146185)
[»] chr7 (1 HSPs)
chr7 (345-438)||(7599272-7599365)
[»] chr1 (1 HSPs)
chr1 (14-89)||(48621509-48621585)


Alignment Details
Target: chr8 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 491
Target Start/End: Complemental strand, 37347758 - 37347269
Alignment:
Q  14 aacctgtgtagctgccaatcgtgcattacaacacataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagca 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347758 aacctgtgtagctgccgatcgtgcattacaacacataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagca 37347659  T
Q  114 ccgcgagaatcaagctctttagcacaaggcttattaaccattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347658 ccgcgagaatcaagctctttagcacaaggcttattaaccattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaa 37347559  T
Q  214 gaacagaattaggacttgaaggcatagcattaacatttg------------aattaacatttaccactcttttctgacactgcaaaagttgacaagcaaa 301  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347558 gaacagaattaggacttgaaggcatagcattaacatttgcattagcatttgaattaacatttaccactcttttctgacactgcaaaagttgacaagcaaa 37347459  T
Q  302 acccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaa 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347458 acccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaa 37347359  T
Q  402 gaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaaaataatcaaaaacatcatac 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37347358 gaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaaaataatcaaaaacatcatac 37347269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 150 - 443
Target Start/End: Complemental strand, 24153686 - 24153381
Alignment:
Q  150 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 248  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||    
T  24153686 accattttaggtaccaaatgaagagggtcataaggtgaatgaggagccattctataacatccgaagaacataattaggacttgaaggcatagcattagca 24153587  T
Q  249 tttg------aattaacatttaccactcttttctgacactgcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgacat 342  Q
    ||||      |||| |||||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||   | | | ||||||||| ||||    
T  24153586 tttgcacttcaatttacatttactactcttttctaacactgtaaaagttgacaagc-aaacccatgttaggatttgt---agcgcaagcattcttcacat 24153491  T
Q  343 aa---------tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatg 433  Q
    ||         |||||||||||||||| | | ||||||| ||||||||| ||||||||||| || |||||| ||||| ||||||||||||| ||||||||    
T  24153490 aatattgaaattgaaaagcatcttcaagggtctgtccttttctccacatgagataagcaatgacaaaagagtttgatttagaaacaccttgtcaacaatg 24153391  T
Q  434 aacaagaaca 443  Q
    || |||||||    
T  24153390 aataagaaca 24153381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 24153794 - 24153719
Alignment:
Q  50 aacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagcaccgcgagaatcaa 126  Q
    ||||||||||||| |||||| |||||||||||||||||||||||  |||| |||| |||||||||| ||||||||||    
T  24153794 aacagaactacaaattttac-aatccaaacatatatagcagaagaaacattaacagtaaaagcaccacgagaatcaa 24153719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 24904384 - 24904335
Alignment:
Q  212 aagaacagaattaggacttgaaggcatagcattaacatttgaattaacat 261  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  24904384 aagaacataattaggacttgaaggcatagtattaacatttaaatttacat 24904335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 150 - 455
Target Start/End: Complemental strand, 26671208 - 26670891
Alignment:
Q  150 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 248  Q
    ||||||||||| ||||||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  26671208 accattttaggcaccaaattaagagggccattaggtgaatgaggagccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 26671110  T
Q  249 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 341  Q
    ||||      |||| |||||||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  26671109 tttgcatttgaatttacatttacaactcttttctgacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 26671013  T
Q  342 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 432  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  26671012 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 26670914  T
Q  433 gaacaagaacacgaccaccttgt 455  Q
    ||||||||||| |||||||||||    
T  26670913 gaacaagaacaagaccaccttgt 26670891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 150 - 455
Target Start/End: Complemental strand, 26673736 - 26673419
Alignment:
Q  150 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 248  Q
    ||||||||||| ||| ||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  26673736 accattttaggcacccaattaagagggccattaggtgaatgaggggccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 26673638  T
Q  249 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 341  Q
    ||||      |||| |||||||| |||||||||| ||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  26673637 tttgcatttgaatttacatttacaactcttttctaacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 26673541  T
Q  342 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 432  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  26673540 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 26673442  T
Q  433 gaacaagaacacgaccaccttgt 455  Q
    ||||||||||| |||||||||||    
T  26673441 gaacaagaacaagaccaccttgt 26673419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 150 - 455
Target Start/End: Complemental strand, 1300553 - 1300236
Alignment:
Q  150 accattttaggtaccaaatgaagaggatcataaggtgaatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaaca 248  Q
    ||||||||||| ||| ||| ||||||  ||| |||||||||||| |||||| || ||||||| ||||||| || |||||||||||||| |||||||||||    
T  1300553 accattttaggcacccaattaagagggccattaggtgaatgaggggccattttataacatcccaagaacataaataggacttgaaggc-tagcattaaca 1300455  T
Q  249 tttg------aattaacatttaccactcttttctgacact-gcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgaca 341  Q
    ||||      |||| |||||||| |||||||||| ||||| | |||| ||||||||||||| |||||||||||||||||||||   |||||||||| |||    
T  1300454 tttgcatttgaatttacatttacaactcttttctaacacttgtaaaatttgacaagcaaaatccatgttaggatttgtaacac---gagcattcttcaca 1300358  T
Q  342 taat---------gaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaat 432  Q
    ||||         ||||||||||||||||  ||||||||| |||| ||| | |||||||||| || ||||||||||||||||||| |||||| |||||||    
T  1300357 taatattgaaattgaaaagcatcttcaaatatttgtccttttctctacaga-gataagcaatgacaaaagaggttgatctagaaataccttgtcaacaat 1300259  T
Q  433 gaacaagaacacgaccaccttgt 455  Q
    ||||||||||| |||||||||||    
T  1300258 gaacaagaacaagaccaccttgt 1300236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 272 - 490
Target Start/End: Complemental strand, 39220317 - 39220099
Alignment:
Q  272 tttctgacactgcaaaagttgacaagcaaaacccatgttaggatttgtaacaccacgagcattcttgacataatgaaaagcatcttcaaagctttgtcct 371  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||| || || |  ||| | || ||| | |||||||||||||||||||| |||||     
T  39220317 tttctgacactgcaagagttgacaagcaaaacccatgtttggatttgtgactccccttgcagttttaacaaactgaaaagcatcttcaaagctctgtccc 39220218  T
Q  372 tctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaagaacacgaccaccttgtaatctaacatcctcaa 471  Q
    |  |||||||| |||||||| || |||||||  |||||||  ||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  39220217 ttcctccacatgagataagctatcaccaaagccgttgatcgcgaaaccccttgacaacaatgaacaagaacacgaccaccttgttctctaacatcctcaa 39220118  T
Q  472 aataatcaaaaacatcata 490  Q
    | |||||||| ||||||||    
T  39220117 agtaatcaaacacatcata 39220099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 39220509 - 39220325
Alignment:
Q  59 acaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagcaccgcgagaatcaagctctttagcacaaggcttattaaccatttta 158  Q
    ||||||||| |||||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||  ||   | ||  || |  |||||||| |||    
T  39220509 acaatttttcccaatccacacatagatagcagaaggaacatgaacaataaaagcaccacgcgaatcaagtgctagtgaacctggttggttaaccatctta 39220410  T
Q  159 ggtaccaaatgaagaggatcataaggtgaatgaggtgccattctaaacatcctaagaacagaattaggacttgaaggcatagcat 243  Q
    || || | ||||||||| |||||||| || ||||| ||||||| | ||||||| | ||||||||||||||||| |||||||||||    
T  39220409 ggaacaagatgaagagggtcataaggagagtgaggagccattcgatacatccttaaaacagaattaggacttgcaggcatagcat 39220325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 45146402 - 45146510
Alignment:
Q  345 tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaagaacac 444  Q
    ||||||||||| | |||||| ||||||| ||||||||||||||||||||| || ||||||||||||||  ||| |||||| |||||  |||||||||||     
T  45146402 tgaaaagcatccttaaagctctgtccttttctccacataagataagcaatgacaaaagaggttgatctccaaataccttgtcaacatagaacaagaacaa 45146501  T
Q  445 gaccacctt 453  Q
    || ||||||    
T  45146502 gatcacctt 45146510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 45146248 - 45146351
Alignment:
Q  187 aatgaggtgccattcta-aacatcctaagaacagaattaggacttgaaggcatagcattaacatttg------aattaacatttaccactcttttctgac 279  Q
    ||||||| ||||||||| |||||||| |||||| |||||||||||||||||||| | ||| ||||||      |||| |||||||| |||||||||||||    
T  45146248 aatgaggagccattctataacatcctgagaacataattaggacttgaaggcataactttagcatttgcacttaaatttacatttactactcttttctgac 45146347  T
Q  280 actg 283  Q
    ||||    
T  45146348 actg 45146351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 45146121 - 45146185
Alignment:
Q  47 cataacagaactacaatttttaccaatccaaacatatatagcagaaggtacatgaacaataaaagc 112  Q
    ||||||||||||||||||||||  ||| |||||||||||||||||||  ||||||||| |||||||    
T  45146121 cataacagaactacaatttttaa-aattcaaacatatatagcagaagaaacatgaacactaaaagc 45146185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 345 - 438
Target Start/End: Complemental strand, 7599365 - 7599272
Alignment:
Q  345 tgaaaagcatcttcaaagctttgtccttctctccacataagataagcaataaccaaagaggttgatctagaaacaccttgacaacaatgaacaa 438  Q
    ||||||||||| ||||| || |||||||| ||||||||||||||||||||||| | ||| || || || || || |||||||||||||||||||    
T  7599365 tgaaaagcatcatcaaaactctgtccttccctccacataagataagcaataacaagagacgtcgacctcgacaccccttgacaacaatgaacaa 7599272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 48621585 - 48621509
Alignment:
Q  14 aacctgtgtagctgccaatcgtgcattacaacacataacagaactacaat-ttttaccaatccaaacatatatagca 89  Q
    ||||| ||||||| |  ||| ||||||||||| |||||  |||||||||| ||||||| ||||||| ||||||||||    
T  48621585 aacctctgtagctactgatcatgcattacaacgcataatcgaactacaattttttaccgatccaaatatatatagca 48621509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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