View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3357_low_2 (Length: 370)
Name: NF3357_low_2
Description: NF3357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3357_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 360
Target Start/End: Original strand, 43653662 - 43654009
Alignment:
| Q |
13 |
gtaccttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaatttgaggctgaaacagcagtggtgaaaagtgtagctgc |
112 |
Q |
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| T |
43653662 |
gtaccttattggccttgcttttttcaaggtattcttcaataacgccagcattagcagaagaattggaggctgaaacagcagtggtgaaaagtgtagctgc |
43653761 |
T |
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| Q |
113 |
caataaagcaagagcatttcttcttccatcacttgctcttgattctttggcttcaggaattctcacctgctgagccttgatcaatggtagcttgatacct |
212 |
Q |
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| T |
43653762 |
caataaagcaagagcatttcttcttccatcacttgctcttgattctttggcttcaggaattctcacctgctgagccttgatcaatggtagcttgatacct |
43653861 |
T |
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| Q |
213 |
gaaacccctggtgatgcagcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43653862 |
gaaacccctggtgatgcagcagagggcactgaaatgagctttgcattgagctcagaaccagatatggcatagctacaagctaatacacttgagttcattg |
43653961 |
T |
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| Q |
313 |
cagccatgtgtaatggattgctagtttagttctgctgatcgatctgtg |
360 |
Q |
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| T |
43653962 |
cagccatgtgtaatggattgctagtttagttctgctgatcgatctgtg |
43654009 |
T |
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