View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3358_high_4 (Length: 227)
Name: NF3358_high_4
Description: NF3358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3358_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 17515278 - 17515487
Alignment:
| Q |
1 |
tgtgattacaactgttttgtcaagagcacacctttgtacctgttaagttttaattatagtgaataatattgtcattacagtacataacacttcataaata |
100 |
Q |
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| T |
17515278 |
tgtgatgacaactgttctatcaagatcacacctttgtacctgttaagtttgaattatagtgaataatattgtcattacagtacataacacttcataagta |
17515377 |
T |
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| Q |
101 |
ttttaactaacctagctagggagctaccattttggatttgagtttgttgcagttagcaaattcatgcattcacatagtaagtatgtcgatggtcgttgta |
200 |
Q |
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| T |
17515378 |
ttttaactaacctagttagggagctaccattttggatttgagtttgttgaactcagcaaattcatgcattcacatagtaagtacgtcgatggtcgttgta |
17515477 |
T |
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| Q |
201 |
tcaaagatag |
210 |
Q |
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| T |
17515478 |
tcgaagatag |
17515487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 208
Target Start/End: Original strand, 16857045 - 16857244
Alignment:
| Q |
9 |
caactgttttgtcaagagcacacctttgtacctgttaagttttaattatagtgaataatattgtcattacagtacataacacttcataaatattttaact |
108 |
Q |
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| T |
16857045 |
caactgttctatccagagcacacctttgtacctgttatgttgaaattgtattaaataatattgtcattacagtacatacctcttcataattattttaatt |
16857144 |
T |
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| Q |
109 |
aacctagctagggagctaccattttggatttgagtttgttgcagttagcaaattcatgcattcacatagtaagtatgtcgatggtcgttgtatcaaagat |
208 |
Q |
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| T |
16857145 |
aacctatctaggcatctaccattttggatttcagtttgttgcagtcagcaaatccatgcattcacatagtaagtacgtcgatggttgctgtatcgaagat |
16857244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 17530442 - 17530581
Alignment:
| Q |
8 |
acaactgttttgtcaagagcacacctttgtacctgttaagttttaattatagtgaataatattgtcattacagtacataacacttcataaatattttaac |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||| ||| || |||||| |||||||||| || ||||| |
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| T |
17530442 |
acaactgttttgtcaagagcacacctttgtacctgttaagttttaattgtattaaata----tgttattccaatacataccacttcataagtagtttaat |
17530537 |
T |
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| Q |
108 |
taacctagctagggagctaccattttggatttgagtttgttgca |
151 |
Q |
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| T |
17530538 |
taacctagctaagtagctaccactttttatttgagtttattgca |
17530581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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