View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3358_high_5 (Length: 226)
Name: NF3358_high_5
Description: NF3358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3358_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 18852909 - 18853101
Alignment:
| Q |
17 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
18852909 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
18853008 |
T |
|
| Q |
117 |
aatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaagaaaaatctactatc |
209 |
Q |
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| T |
18853009 |
aatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaaaatctatatcaagaaaaatctactatc |
18853101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 50014090 - 50014275
Alignment:
| Q |
17 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
50014090 |
atatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaaccaacttcaa |
50014189 |
T |
|
| Q |
117 |
aatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaagaaaaatctac |
205 |
Q |
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| T |
50014190 |
aattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatctatatcaaacaaaatctac |
50014275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 18841850 - 18842023
Alignment:
| Q |
17 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| | ||||| | ||| |
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| T |
18841850 |
atatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctac----aaaatta---gcaa |
18841942 |
T |
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| Q |
117 |
aatttgccacaatat---tatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaa |
194 |
Q |
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| T |
18841943 |
aattagccataatatacatgcatgattcgatttttatggttttctttatgtaaaaccatgtccacagaagatctatatcaa |
18842023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 51299074 - 51299261
Alignment:
| Q |
17 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
116 |
Q |
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||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51299074 |
atatctattcattgcttcagcatatgtaagcctagggaaaggatttggtaattccacacccttaatttcaagaaaaacctgcaataaaaaccaacttcaa |
51299173 |
T |
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| Q |
117 |
aatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaagaaaaatctac |
205 |
Q |
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|||| |||| |||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51299174 |
aattagccataata-tacatgattcgatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaaacaaaatctac |
51299261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 44111162 - 44111347
Alignment:
| Q |
17 |
atatctattcattgcttcagcatatgtaagcctgggaaaagggtttggtaattccactcccttaatttcaagaaaaacctgcaataaaaatcaacttcaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44111162 |
atatctattcattgcttcagcatatgtaagcctggggaaagggtttggtaattccacgcccttaatttcaagaaaaacctgcaataaaaaccaacttcaa |
44111261 |
T |
|
| Q |
117 |
aatttgccacaatattatttgattcaatttttatggttttctttatgtaaaaccacgtccacaaaagatctatatcaagaaaaatctac |
205 |
Q |
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|||| |||| |||| || |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
44111262 |
aattagccataata-tacatgat--gatttttatggttttctttatgtgaaaccacgtccacaaaagatctatatcaaacaaaatctac |
44111347 |
T |
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