View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3358_low_2 (Length: 294)
Name: NF3358_low_2
Description: NF3358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3358_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 40171884 - 40172148
Alignment:
| Q |
15 |
tatgtttgggtaagtggtatagggtggaatggagtggaataaaatggaatggaatgagatatcatttgttttttaaaatcgaaactcaggaatgttagcc |
114 |
Q |
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| T |
40171884 |
tatgtttgggtaagtggtatagggtggaacggagtggaataaaatggaatggaatgagatatcatttgttttttaaaatctaaactcaggaatcttagcc |
40171983 |
T |
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| Q |
115 |
cattccgctctattagactttagaccaccaatttcaattccaaacacaccttaagcaatgagacctgtgatatattgaaacgttgaataggagttatatc |
214 |
Q |
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| T |
40171984 |
cattccgctctattagactttataccaccaatttcaattcccaacacaccgtaagcaatgagacctgtgatatattgaaatgttgaatagaagttatatc |
40172083 |
T |
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| Q |
215 |
ccatttaatgtaattgaatagagtcaatgtaggtgacttgaagacatgatttatcagttcaatct |
279 |
Q |
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| T |
40172084 |
ccatttaatgtaattgaatagagtcaatgtaggtgacttgaagacatgatgtatcagttcaatct |
40172148 |
T |
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